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Report for CCDS3389.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3389.1 Public Homo sapiens 4 MRFAP1 24 110 108 CCDS HistoryNCBI Gene:93621Re-query CCDS DB by CCDS ID:3389.1Re-query CCDS DB by GeneID:93621See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3389.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000320912.8 ENSP00000318352.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000320912.8Link to Ensembl Protein Viewer:ENSP00000318352.4Re-query CCDS DB by Nucleotide ID:ENST00000320912Re-query CCDS DB by Protein ID:ENSP00000318352
Original member Current member EBI ENST00000382581.5 ENSP00000372024.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000382581.5Link to Ensembl Protein Viewer:ENSP00000372024.4Re-query CCDS DB by Nucleotide ID:ENST00000382581Re-query CCDS DB by Protein ID:ENSP00000372024
Original member Current member EBI ENST00000507420.1 ENSP00000422065.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000507420.1Link to Ensembl Protein Viewer:ENSP00000422065.1Re-query CCDS DB by Nucleotide ID:ENST00000507420Re-query CCDS DB by Protein ID:ENSP00000422065
Original member Current member NCBI NM_001272053.2 NP_001258982.1 Accepted alive Link to Nucleotide Sequence:NM_001272053.2Link to Protein Sequence:NP_001258982.1Re-query CCDS DB by Nucleotide ID:NM_001272053Re-query CCDS DB by Protein ID:NP_001258982Link to BLAST:NP_001258982.1
Original member Current member NCBI NM_033296.3 NP_150638.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_033296.3Link to Protein Sequence:NP_150638.1Re-query CCDS DB by Nucleotide ID:NM_033296Re-query CCDS DB by Protein ID:NP_150638Link to BLAST:NP_150638.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001258982.1 127 Q9Y605 127 100% 0 0
NP_150638.1 127 Q9Y605 127 100% 0 0

Chromosomal Locations for CCDS 3389.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 6640863 6641246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (384 nt):
ATGCGGCCCCTGGACATCGTCGAGCTGGCGGAACCGGAGGAAGTGGAGGTGCTGGAGCCCGAGGAGGATT
TCGAGCAGTTTCTGCTCCCGGTCATCAACGAGATGCGCGAGGACATCGCGTCGCTGACGCGCGAGCACGG
GCGGGCGTACCTGCGGAACCGGAGCAAGCTGTGGGAGATGGACAATATGCTCATCCAGATCAAAACGCAG
GTGGAGGCCTCGGAGGAGAGCGCCCTCAACCACCTCCAGAACCCGGGCGACGCGGCCGAGGGCCGGGCGG
CCAAGAGGTGCGAGAAGGCCGAGGAGAAGGCCAAGGAGATTGCGAAGATGGCAGAGATGCTGGTGGAGCT
GGTCCGGCGGATAGAGAAGAGCGAGTCGTCGTGA

Translation (127 aa):
MRPLDIVELAEPEEVEVLEPEEDFEQFLLPVINEMREDIASLTREHGRAYLRNRSKLWEMDNMLIQIKTQ
VEASEESALNHLQNPGDAAEGRAAKRCEKAEEKAKEIAKMAEMLVELVRRIEKSESS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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