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Report for CCDS33545.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33545.1 Public Homo sapiens 21 ITSN1 24 110 108 CCDS HistoryNCBI Gene:6453Re-query CCDS DB by CCDS ID:33545.1Re-query CCDS DB by GeneID:6453See the combined annotation on chromosome 21 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33545.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000381318.8 ENSP00000370719.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000381318.8Link to Ensembl Protein Viewer:ENSP00000370719.3Re-query CCDS DB by Nucleotide ID:ENST00000381318Re-query CCDS DB by Protein ID:ENSP00000370719
Original member Current member NCBI NM_003024.3 NP_003015.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003024.3Link to Protein Sequence:NP_003015.2Re-query CCDS DB by Nucleotide ID:NM_003024Re-query CCDS DB by Protein ID:NP_003015Link to BLAST:NP_003015.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003015.2 1721 Q15811-1 1721 100% 0 0

Chromosomal Locations for CCDS 33545.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 21 (NC_000021.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21See the combined annotation on chromosome 21 in Sequence Viewer

Chromosome Start Stop Links
21 33718829 33718856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 33721178 33721270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 33722588 33722651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 33735044 33735204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 33750143 33750322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 33751810 33751906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 33755297 33755397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 33761923 33761986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 33765875 33766012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 33767713 33767828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 33772061 33772323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 33774729 33774878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 33774968 33775108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 33781461 33781548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 33781994 33782133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 33794341 33794468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 33797379 33797608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 33799808 33799929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 33802430 33802444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 33810975 33811222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 33813913 33814072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 33818267 33818472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 33819241 33819323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 33823487 33823653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 33826818 33826863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 33829624 33829745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 33834307 33834424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 33836441 33836632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 33856736 33856857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 33858686 33858792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 33865151 33865334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 33867233 33867331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 33875354 33875521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 33882243 33882455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 33883550 33883671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 33885041 33885123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 33885439 33885522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 33886287 33886460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 33888152 33888300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5166 nt):
ATGGCTCAGTTTCCAACACCTTTTGGTGGCAGCCTGGATATCTGGGCCATAACTGTAGAGGAAAGAGCGA
AGCATGATCAGCAGTTCCATAGTTTAAAGCCAATATCTGGATTCATTACTGGTGATCAAGCTAGAAACTT
TTTTTTTCAATCTGGGTTACCTCAACCTGTTTTAGCACAGATATGGGCACTAGCTGACATGAATAATGAT
GGAAGAATGGATCAAGTGGAGTTTTCCATAGCTATGAAACTTATCAAACTGAAGCTACAAGGATATCAGC
TACCCTCTGCACTTCCCCCTGTCATGAAACAGCAACCAGTTGCTATTTCTAGCGCACCAGCATTTGGTAT
GGGAGGTATCGCCAGCATGCCACCGCTTACAGCTGTTGCTCCAGTGCCAATGGGATCCATTCCAGTTGTT
GGAATGTCTCCAACCCTAGTATCTTCTGTTCCCACAGCAGCTGTGCCCCCCCTGGCTAACGGGGCTCCCC
CTGTTATACAACCTCTGCCTGCATTTGCTCATCCTGCAGCCACATTGCCAAAGAGTTCTTCCTTTAGTAG
ATCTGGTCCAGGGTCACAACTAAACACTAAATTACAAAAGGCACAGTCATTTGATGTGGCCAGTGTCCCA
CCAGTGGCAGAGTGGGCTGTTCCTCAGTCATCAAGACTGAAATACAGGCAATTATTCAATAGTCATGACA
AAACTATGAGTGGACACTTAACAGGTCCCCAAGCAAGAACTATTCTTATGCAGTCAAGTTTACCACAGGC
TCAGCTGGCTTCAATATGGAATCTTTCTGACATTGATCAAGATGGAAAACTTACAGCAGAGGAATTTATC
CTGGCAATGCACCTCATTGATGTAGCTATGTCTGGCCAACCACTGCCACCTGTCCTGCCTCCAGAATACA
TTCCACCTTCTTTTAGAAGAGTTCGATCTGGCAGTGGTATATCTGTCATAAGCTCAACATCTGTAGATCA
GAGGCTACCAGAGGAACCAGTTTTAGAAGATGAACAACAACAATTAGAAAAGAAATTACCTGTAACGTTT
GAAGATAAGAAGCGGGAGAACTTTGAACGTGGCAACCTGGAACTGGAGAAACGAAGGCAAGCTCTCCTGG
AACAGCAGCGCAAGGAGCAGGAGCGCCTGGCCCAGCTGGAGCGGGCGGAGCAGGAGAGGAAGGAGCGTGA
GCGCCAGGAGCAAGAGCGCAAAAGACAACTGGAACTGGAGAAGCAACTGGAAAAGCAGCGGGAGCTAGAA
CGGCAGAGAGAGGAGGAGAGGAGGAAAGAAATTGAGAGGCGAGAGGCTGCAAAACGGGAACTTGAAAGGC
AACGACAACTTGAGTGGGAACGGAATCGAAGGCAAGAACTACTAAATCAAAGAAACAAAGAACAAGAGGA
CATAGTTGTACTGAAAGCAAAGAAAAAGACTTTGGAATTTGAATTAGAAGCTCTAAATGATAAAAAGCAT
CAACTAGAAGGGAAACTTCAAGATATCAGATGTCGATTGACCACCCAAAGGCAAGAAATTGAGAGCACAA
ACAAATCTAGAGAGTTGAGAATTGCCGAAATCACCCATCTACAGCAACAATTACAGGAATCTCAGCAAAT
GCTTGGAAGACTTATTCCAGAAAAACAGATACTCAATGACCAATTAAAACAAGTTCAGCAGAACAGTTTG
CACAGAGATTCACTTGTTACACTTAAAAGAGCCTTAGAAGCAAAAGAACTAGCTCGGCAGCACCTACGAG
ACCAACTGGATGAAGTGGAGAAAGAAACTAGATCAAAACTACAGGAGATTGATATTTTCAATAATCAGCT
GAAGGAACTAAGAGAAATACACAATAAGCAACAACTCCAGAAGCAAAAGTCCATGGAGGCTGAACGACTG
AAACAGAAAGAACAAGAACGAAAGATCATAGAATTAGAAAAACAAAAAGAAGAAGCCCAAAGACGAGCTC
AGGAAAGGGACAAGCAGTGGCTGGAGCATGTGCAGCAGGAGGACGAGCATCAGAGACCAAGAAAACTCCA
CGAAGAGGAAAAACTGAAAAGGGAGGAGAGTGTCAAAAAGAAGGATGGCGAGGAAAAAGGCAAACAGGAA
GCACAAGACAAGCTGGGTCGGCTTTTCCATCAACACCAAGAACCAGCTAAGCCAGCTGTCCAGGCACCCT
GGTCCACTGCAGAAAAAGGTCCACTTACCATTTCTGCACAGGAAAATGTAAAAGTGGTGTATTACCGGGC
ACTGTACCCCTTTGAATCCAGAAGCCATGATGAAATCACTATCCAGCCAGGAGACATAGTCATGGTTAAA
GGGGAATGGGTGGATGAAAGCCAAACTGGAGAACCCGGCTGGCTTGGAGGAGAATTAAAAGGAAAGACAG
GGTGGTTCCCTGCAAACTATGCAGAGAAAATCCCAGAAAATGAGGTTCCCGCTCCAGTGAAACCAGTGAC
TGATTCAACATCTGCCCCTGCCCCCAAACTGGCCTTGCGTGAGACCCCCGCCCCTTTGGCAGTAACCTCT
TCAGAGCCCTCCACGACCCCTAATAACTGGGCCGACTTCAGCTCCACGTGGCCCACCAGCACGAATGAGA
AACCAGAAACGGATAACTGGGATGCATGGGCAGCCCAGCCCTCTCTCACCGTTCCAAGTGCCGGCCAGTT
AAGGCAGAGGTCCGCCTTTACTCCAGCCACGGCCACTGGCTCCTCCCCGTCTCCTGTGCTAGGCCAGGGT
GAAAAGGTGGAGGGGCTACAAGCTCAAGCCCTATATCCTTGGAGAGCCAAAAAAGACAACCACTTAAATT
TTAACAAAAATGATGTCATCACCGTCCTGGAACAGCAAGACATGTGGTGGTTTGGAGAAGTTCAAGGTCA
GAAGGGTTGGTTCCCCAAGTCTTACGTGAAACTCATTTCAGGGCCCATAAGGAAGTCTACAAGCATGGAT
TCTGGTTCTTCAGAGAGTCCTGCTAGTCTAAAGCGAGTAGCCTCTCCAGCAGCCAAGCCGGTCGTTTCGG
GAGAAGAATTTATTGCCATGTACACTTACGAGAGTTCTGAGCAAGGAGATTTAACCTTTCAGCAAGGGGA
TGTGATTTTGGTTACCAAGAAAGATGGTGACTGGTGGACAGGAACAGTGGGCGACAAGGCCGGAGTCTTC
CCTTCTAACTATGTGAGGCTTAAAGATTCAGAGGGCTCTGGAACTGCTGGGAAAACAGGGAGTTTAGGAA
AAAAACCTGAAATTGCCCAGGTTATTGCCTCATACACCGCCACCGGCCCCGAGCAGCTCACTCTCGCCCC
TGGTCAGCTGATTTTGATCCGAAAAAAGAACCCAGGTGGATGGTGGGAAGGAGAGCTGCAAGCACGTGGG
AAAAAGCGCCAGATAGGCTGGTTCCCAGCTAATTATGTAAAGCTTCTAAGCCCTGGGACGAGCAAAATCA
CTCCAACAGAGCCACCTAAGTCAACAGCATTAGCGGCAGTGTGCCAGGTGATTGGGATGTACGACTACAC
CGCGCAGAATGACGATGAGCTGGCCTTCAACAAGGGCCAGATCATCAACGTCCTCAACAAGGAGGACCCT
GACTGGTGGAAAGGAGAAGTCAATGGACAAGTGGGGCTCTTCCCATCCAATTATGTGAAGCTGACCACAG
ACATGGACCCAAGCCAGCAATGGTGTTCAGACTTACATCTCTTGGATATGTTGACCCCAACTGAAAGAAA
GCGACAAGGATACATCCACGAGCTCATTGTCACCGAGGAGAACTATGTGAATGACCTGCAGCTGGTCACA
GAGATTTTTCAAAAACCCCTGATGGAGTCTGAGCTGCTGACAGAAAAAGAGGTTGCTATGATTTTTGTGA
ACTGGAAGGAGCTGATTATGTGTAATATCAAACTACTAAAAGCGCTGAGAGTCCGCAAGAAGATGTCCGG
GGAGAAGATGCCTGTGAAGATGATTGGAGACATCCTGAGCGCACAGCTGCCGCACATGCAGCCCTACATC
CGCTTCTGCAGCCGCCAGCTCAACGGGGCTGCCCTGATCCAGCAGAAGACGGATGAGGCCCCAGACTTCA
AGGAGTTCGTCAAAAGATTGGCAATGGATCCTCGGTGTAAAGGGATGCCACTCTCTAGTTTTATACTGAA
GCCTATGCAACGGGTAACAAGATACCCACTGATCATTAAAAATATCCTGGAAAACACCCCTGAAAACCAC
CCGGACCACAGCCACTTGAAGCACGCCCTGGAGAAGGCGGAAGAGCTCTGTTCCCAGGTGAACGAAGGGG
TGCGGGAGAAGGAGAACTCTGACCGGCTGGAGTGGATCCAGGCCCACGTGCAGTGTGAAGGCCTGTCTGA
GCAACTTGTGTTCAATTCAGTGACCAATTGCTTGGGGCCGCGCAAATTTCTGCACAGTGGGAAGCTCTAC
AAGGCCAAGAGCAACAAGGAGCTGTATGGCTTCCTTTTCAACGACTTCCTCCTGCTGACTCAGATCACGA
AGCCTTTGGGGTCTTCTGGCACCGACAAAGTCTTCAGCCCCAAATCAAACCTGCAGTATAAAATGTATAA
AACACCTATTTTCCTAAATGAGGTTCTAGTAAAATTACCCACCGACCCTTCTGGAGACGAGCCCATCTTC
CACATCTCCCACATTGACCGCGTCTATACTCTCCGAGCAGAAAGCATAAATGAAAGGACTGCCTGGGTGC
AGAAAATCAAAGCTGCTTCTGAACTCTACATAGAGACTGAGAAAAAGAAGCGCGAGAAAGCGTACCTGGT
CCGTTCCCAAAGGGCAACAGGCATTGGAAGGTTGATGGTGAACGTGGTTGAAGGCATCGAGTTGAAACCC
TGTCGGTCACATGGAAAGAGCAACCCGTACTGTGAGGTGACCATGGGTTCCCAGTGCCACATCACCAAGA
CGATCCAGGACACTCTGAACCCCAAGTGGAATTCCAACTGCCAGTTCTTCATCCGAGACCTGGAGCAGGA
AGTCCTCTGCATCACTGTGTTCGAGAGGGACCAGTTCTCACCAGATGATTTTTTGGGTCGGACGGAGATC
CGTGTGGCGGACATCAAGAAAGACCAGGGCTCCAAAGGTCCAGTTACGAAGTGTCTTCTGCTGCACGAAG
TCCCCACGGGAGAGATTGTGGTCCGCTTGGACCTGCAGTTGTTTGATGAGCCGTAG

Translation (1721 aa):
MAQFPTPFGGSLDIWAITVEERAKHDQQFHSLKPISGFITGDQARNFFFQSGLPQPVLAQIWALADMNND
GRMDQVEFSIAMKLIKLKLQGYQLPSALPPVMKQQPVAISSAPAFGMGGIASMPPLTAVAPVPMGSIPVV
GMSPTLVSSVPTAAVPPLANGAPPVIQPLPAFAHPAATLPKSSSFSRSGPGSQLNTKLQKAQSFDVASVP
PVAEWAVPQSSRLKYRQLFNSHDKTMSGHLTGPQARTILMQSSLPQAQLASIWNLSDIDQDGKLTAEEFI
LAMHLIDVAMSGQPLPPVLPPEYIPPSFRRVRSGSGISVISSTSVDQRLPEEPVLEDEQQQLEKKLPVTF
EDKKRENFERGNLELEKRRQALLEQQRKEQERLAQLERAEQERKERERQEQERKRQLELEKQLEKQRELE
RQREEERRKEIERREAAKRELERQRQLEWERNRRQELLNQRNKEQEDIVVLKAKKKTLEFELEALNDKKH
QLEGKLQDIRCRLTTQRQEIESTNKSRELRIAEITHLQQQLQESQQMLGRLIPEKQILNDQLKQVQQNSL
HRDSLVTLKRALEAKELARQHLRDQLDEVEKETRSKLQEIDIFNNQLKELREIHNKQQLQKQKSMEAERL
KQKEQERKIIELEKQKEEAQRRAQERDKQWLEHVQQEDEHQRPRKLHEEEKLKREESVKKKDGEEKGKQE
AQDKLGRLFHQHQEPAKPAVQAPWSTAEKGPLTISAQENVKVVYYRALYPFESRSHDEITIQPGDIVMVK
GEWVDESQTGEPGWLGGELKGKTGWFPANYAEKIPENEVPAPVKPVTDSTSAPAPKLALRETPAPLAVTS
SEPSTTPNNWADFSSTWPTSTNEKPETDNWDAWAAQPSLTVPSAGQLRQRSAFTPATATGSSPSPVLGQG
EKVEGLQAQALYPWRAKKDNHLNFNKNDVITVLEQQDMWWFGEVQGQKGWFPKSYVKLISGPIRKSTSMD
SGSSESPASLKRVASPAAKPVVSGEEFIAMYTYESSEQGDLTFQQGDVILVTKKDGDWWTGTVGDKAGVF
PSNYVRLKDSEGSGTAGKTGSLGKKPEIAQVIASYTATGPEQLTLAPGQLILIRKKNPGGWWEGELQARG
KKRQIGWFPANYVKLLSPGTSKITPTEPPKSTALAAVCQVIGMYDYTAQNDDELAFNKGQIINVLNKEDP
DWWKGEVNGQVGLFPSNYVKLTTDMDPSQQWCSDLHLLDMLTPTERKRQGYIHELIVTEENYVNDLQLVT
EIFQKPLMESELLTEKEVAMIFVNWKELIMCNIKLLKALRVRKKMSGEKMPVKMIGDILSAQLPHMQPYI
RFCSRQLNGAALIQQKTDEAPDFKEFVKRLAMDPRCKGMPLSSFILKPMQRVTRYPLIIKNILENTPENH
PDHSHLKHALEKAEELCSQVNEGVREKENSDRLEWIQAHVQCEGLSEQLVFNSVTNCLGPRKFLHSGKLY
KAKSNKELYGFLFNDFLLLTQITKPLGSSGTDKVFSPKSNLQYKMYKTPIFLNEVLVKLPTDPSGDEPIF
HISHIDRVYTLRAESINERTAWVQKIKAASELYIETEKKKREKAYLVRSQRATGIGRLMVNVVEGIELKP
CRSHGKSNPYCEVTMGSQCHITKTIQDTLNPKWNSNCQFFIRDLEQEVLCITVFERDQFSPDDFLGRTEI
RVADIKKDQGSKGPVTKCLLLHEVPTGEIVVRLDLQLFDEP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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