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Report for CCDS33121.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33121.1 Public Homo sapiens 19 ZNF582 24 110 108 CCDS HistoryNCBI Gene:147948Re-query CCDS DB by CCDS ID:33121.1Re-query CCDS DB by GeneID:147948See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 33121.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000301310.8 ENSP00000301310.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000301310.8Link to Ensembl Protein Viewer:ENSP00000301310.3Re-query CCDS DB by Nucleotide ID:ENST00000301310Re-query CCDS DB by Protein ID:ENSP00000301310
Original member Current member EBI ENST00000586929.6 ENSP00000465619.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000586929.6Link to Ensembl Protein Viewer:ENSP00000465619.1Re-query CCDS DB by Nucleotide ID:ENST00000586929Re-query CCDS DB by Protein ID:ENSP00000465619
Original member Current member NCBI NM_001320371.4 NP_001307300.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001320371.4Link to Protein Sequence:NP_001307300.2Re-query CCDS DB by Nucleotide ID:NM_001320371Re-query CCDS DB by Protein ID:NP_001307300Link to BLAST:NP_001307300.2
Original member Current member NCBI NM_144690.3 NP_653291.1 Accepted alive Link to Nucleotide Sequence:NM_144690.3Link to Protein Sequence:NP_653291.1Re-query CCDS DB by Nucleotide ID:NM_144690Re-query CCDS DB by Protein ID:NP_653291Link to BLAST:NP_653291.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001307300.2 517 Q96NG8 517 100% 0 0
NP_653291.1 517 Q96NG8 517 100% 0 0

Chromosomal Locations for CCDS 33121.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 56383863 56385184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 56390001 56390096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 56390375 56390501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 56391744 56391752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1554 nt):
ATGTCCCTTGGGTCAGAATTGTTCAGGGATGTGGCCATAGTCTTCTCCCAAGAAGAATGGCAGTGGTTGG
CACCTGCTCAGAGGGATTTGTACAGAGACGTGATGTTGGAGACCTACAGCAACCTGGTCTCACTGGGTCT
TGCCGTTTCCAAACCTGATGTGATCTCCTTCCTAGAGCAAGGCAAAGAGCCCTGGATGGTGGAGAGAGTG
GTGTCTGGAGGCCTGTGTCCAGTATTGGAGTCCAGATATGATACCAAGGAATTATTTCCAAAGCAGCATG
TTTATGAAGTCGAATCACCCCAATGGGAGATAATGGAAAGCCTTACAAGTTATGGTCTTGAGTGTTCAAG
TTTCCAAGATGATTGGGAATGCAGAAACCAGTTTGACAGACAACAGGGAAATCCAGACAGACATTTCCAT
CAGATGATCATCAGACATGAAGAAATGCCCACTTTTGACCAGCATGCATCCCTTACTTTTTATCAGAAAA
TTCATACTAGAGAAAAACCTTTTGGGTATAATAAATGTAGAAAAGACTTCTGGCAAAAGGAACTCCTTAT
TAATCATCAAGGAATTTATACTAATGAGAAACCCTATAAATGTAAGGAATGTGGGAAGGCCTTTAAATAT
GGCTCACGACTAATTCAACATGAGAATATTCATTCTGGTAAGAAACCATATGAATGTAAGGAATGTGGAA
AGGCCTTCAATTCTGGTTCAAATTTTATACAACATCAGAGAGTTCATACTGGTGAGAAACCGTATGAATG
TAAAGATTGTGAGAAGGCCTTTAGTCGAAGCTCACAGTTGATTGAACATCAGCGAACTCACACAGGCGAG
AAACCCTATCAGTGTAAGGAATGTGGCAAGGCCTTCAATCGGATCTCACATCTTAAAGTACATTATAGAA
TTCATACTGGTGAAAAACCCTATGCATGCAAGGAATGTGGGAAAACCTTTAGTCATCGTTCTCAGTTGAT
TCAACATCAGACTGTTCATACTGGCAGGAAACTCTATGAATGTAAGGAATGTGGGAAGGCTTTTAATCAA
GGCTCAACTCTTATACGACATCAGAGAATTCATACCGGTGAGAAACCCTATGAGTGCAAAGTATGTGGAA
AGGCCTTTAGAGTGAGCTCACAACTCAAGCAACATCAGAGAATTCACACTGGAGAGAAACCCTACCAATG
TAAGGTATGTGGTAGGGCCTTCAAACGGGTCTCACATCTTACTGTACATTACAGAATTCATACAGGTGAA
AAGCCATATGAATGTAAGGAATGTGGGAAGGCTTTTAGTCATTGCTCACAATTGATTCATCATCAGGTTA
TTCACACTGAGAAAAAGCCCTATGAATATAAGGAATGTGAGAAGACCTTGAGTCATGATTCAACTACCGT
TCAACCTCAGAGAATGCATAATAGAGAAACACATGTGAATATAATAAATGTAGAAAAGCCTTCCATCAGC
AGTTACCCCTTACTAATCATCAGAGAATTTATGTTGGCAAGCAACCATATGAATGGAAGTAATGGGGAAA
GCCCATTAGCCTAG

Translation (517 aa):
MSLGSELFRDVAIVFSQEEWQWLAPAQRDLYRDVMLETYSNLVSLGLAVSKPDVISFLEQGKEPWMVERV
VSGGLCPVLESRYDTKELFPKQHVYEVESPQWEIMESLTSYGLECSSFQDDWECRNQFDRQQGNPDRHFH
QMIIRHEEMPTFDQHASLTFYQKIHTREKPFGYNKCRKDFWQKELLINHQGIYTNEKPYKCKECGKAFKY
GSRLIQHENIHSGKKPYECKECGKAFNSGSNFIQHQRVHTGEKPYECKDCEKAFSRSSQLIEHQRTHTGE
KPYQCKECGKAFNRISHLKVHYRIHTGEKPYACKECGKTFSHRSQLIQHQTVHTGRKLYECKECGKAFNQ
GSTLIRHQRIHTGEKPYECKVCGKAFRVSSQLKQHQRIHTGEKPYQCKVCGRAFKRVSHLTVHYRIHTGE
KPYECKECGKAFSHCSQLIHHQVIHTEKKPYEYKECEKTLSHDSTTVQPQRMHNRETHVNIINVEKPSIS
SYPLLIIREFMLASNHMNGSNGESPLA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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