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Report for CCDS3276.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3276.1 Public Homo sapiens 3 TBCCD1 24 110 108 CCDS HistoryNCBI Gene:55171Re-query CCDS DB by CCDS ID:3276.1Re-query CCDS DB by GeneID:55171See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3276.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000338733.10 ENSP00000341652.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000338733.10Link to Ensembl Protein Viewer:ENSP00000341652.5Re-query CCDS DB by Nucleotide ID:ENST00000338733Re-query CCDS DB by Protein ID:ENSP00000341652
Original member Current member EBI ENST00000424280.5 ENSP00000411253.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000424280.5Link to Ensembl Protein Viewer:ENSP00000411253.1Re-query CCDS DB by Nucleotide ID:ENST00000424280Re-query CCDS DB by Protein ID:ENSP00000411253
Original member Current member NCBI NM_001134415.1 NP_001127887.1 Accepted alive Link to Nucleotide Sequence:NM_001134415.1Link to Protein Sequence:NP_001127887.1Re-query CCDS DB by Nucleotide ID:NM_001134415Re-query CCDS DB by Protein ID:NP_001127887Link to BLAST:NP_001127887.1
Original member Current member NCBI NM_018138.5 NP_060608.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018138.5Link to Protein Sequence:NP_060608.1Re-query CCDS DB by Nucleotide ID:NM_018138Re-query CCDS DB by Protein ID:NP_060608Link to BLAST:NP_060608.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001127887.1 557 Q9NVR7-1 557 100% 0 0
NP_060608.1 557 Q9NVR7-1 557 100% 0 0

Chromosomal Locations for CCDS 3276.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 186551150 186551279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 186554254 186554751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 186554898 186555084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 186556409 186556775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 186558417 186558572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 186563994 186564329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1674 nt):
ATGGATCAGTCCAGAGTTCTCCTCTGGGTGAAAGCAGAACCCTTTATAGTGGGTGCCTTGCAGGTCCCCC
CTCCATCCAAGTTTAGTCTTCACTATCTCAGGAAGATATCCACCTATGTGCAAATCCGGGCCACAGAAGG
AGCTTACCCGCGCCTCTACTGGTCTACATGGAGGCACATCGCTTGTGGGAAGCTGCAGTTGGCCAAGGAC
CTGGCGTGGCTTTACTTCGAAATATTTGATAGTCTTTCAATGAAGACACCTGAGGAGCGCCTGGAATGGT
CTGAGGTTCTGTCCAACTGCATGTCTGAGGAGGAAGTTGAAAAGCAGAGAAATCAGCTTTCAGTGGACAC
GCTACAGTTTCTGCTCTTCTTATACATTCAACAGTTGAACAAGGTCTCCCTAAGGACATCTTTGATTGGC
GAAGAGTGGCCCAGTCCCAGAAACAAATCTCAGTCTCCTGACCTGACTGAAAAATCTAATTGTCATAATA
AGAACTGGAATGATTACAGTCACCAAGCTTTTGTCTATGATCATCTGTCTGATCTCCTCGAGCTGCTTTT
AGATCCAAAACAACTCACTGCATCATTTCATTCAACCCATAGTAGTCTAGTGTCTCGAGAAGCTGTTGTG
GCGCTCAGCTTCCTTATTGAAGGTACAATAAGTAGAGCCAGGAAGATCTATCCACTTCATGAACTTGCAC
TGTGGCAACCACTGCATGCAGATAGTGGCTTCTCAAAGATCTCTAAGACTTTCTCTTTCTACAAACTGGA
AACCTGGTTGAGGTCCTGTTTGACTGGGAATCCATTTGGTACATCAGCTTGCCTCAAGTCTGGAAAGAAA
TTGGCTTGGGCTCATCAAGTTGAAGGGACCACCAAAAGAGCTAAGATTGCTTGTAATACTCATGTGGCCC
CTAGGATGCACCGACTGGTAGTGATGAGCCAGGTTTACAAGCAGACACTGGCTAAGAGCTCAGACACTCT
GGCGGGGGCACATGTAAAGATTCATCGTTGCAACGAATCTTTTATATATCTGCTCTCTCCCTTACGATCT
GTGACAATTGAGAAGTGCAGGAATAGCATCTTTGTCTTGGGCCCTGTAGGGACTACACTTCACCTCCACA
GTTGTGACAATGTTAAAGTCATTGCTGTTTGCCATCGTTTGTCCATCTCTTCTACAACAGGTTGCATCTT
TCACGTTCTTACGCCTACACGCCCACTTATTCTCTCTGGGAACCAGACAGTAACTTTTGCCCCTTTTCAT
ACACATTACCCAATGCTAGAGGACCATATGGCCAGGACTGGCCTTGCTACAGTGCCTAACTATTGGGATA
ATCCAATGGTTGTGTGCAGAGAGAACAGCGACACAAGAGTCTTCCAGCTTTTACCACCTTGTGAATTCTA
TGTATTTATTATTCCCTTTGAAATGGAAGGGGACACAACAGAGATACCCGGGGGTCTTCCATCTGTATAT
CAGAAAGCACTGGGTCAAAGAGAACAGAAGATACAGATCTGGCAGAAAACTGTGAAGGAGGCTCATTTGA
CAAAGGATCAAAGGAAGCAGTTCCAGGTACTGGTAGAGAACAAGTTTTATGAATGGTTGATTAATACAGG
ACATCGCCAACAGCTGGACAGCCTTGTACCCCCTGCAGCAGGCTCCAAACAAGCAGCTGGATAA

Translation (557 aa):
MDQSRVLLWVKAEPFIVGALQVPPPSKFSLHYLRKISTYVQIRATEGAYPRLYWSTWRHIACGKLQLAKD
LAWLYFEIFDSLSMKTPEERLEWSEVLSNCMSEEEVEKQRNQLSVDTLQFLLFLYIQQLNKVSLRTSLIG
EEWPSPRNKSQSPDLTEKSNCHNKNWNDYSHQAFVYDHLSDLLELLLDPKQLTASFHSTHSSLVSREAVV
ALSFLIEGTISRARKIYPLHELALWQPLHADSGFSKISKTFSFYKLETWLRSCLTGNPFGTSACLKSGKK
LAWAHQVEGTTKRAKIACNTHVAPRMHRLVVMSQVYKQTLAKSSDTLAGAHVKIHRCNESFIYLLSPLRS
VTIEKCRNSIFVLGPVGTTLHLHSCDNVKVIAVCHRLSISSTTGCIFHVLTPTRPLILSGNQTVTFAPFH
THYPMLEDHMARTGLATVPNYWDNPMVVCRENSDTRVFQLLPPCEFYVFIIPFEMEGDTTEIPGGLPSVY
QKALGQREQKIQIWQKTVKEAHLTKDQRKQFQVLVENKFYEWLINTGHRQQLDSLVPPAAGSKQAAG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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