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Report for CCDS32609.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
32609.1 Public Homo sapiens 17 LRRC37B 24 110 108 CCDS HistoryNCBI Gene:114659Re-query CCDS DB by CCDS ID:32609.1Re-query CCDS DB by GeneID:114659See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 32609.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000341671.12 ENSP00000340519.7 Accepted alive Link to Ensembl Transcript Viewer:ENST00000341671.12Link to Ensembl Protein Viewer:ENSP00000340519.7Re-query CCDS DB by Nucleotide ID:ENST00000341671Re-query CCDS DB by Protein ID:ENSP00000340519
Original member Current member NCBI NM_052888.3 NP_443120.2 Accepted alive Link to Nucleotide Sequence:NM_052888.3Link to Protein Sequence:NP_443120.2Re-query CCDS DB by Nucleotide ID:NM_052888Re-query CCDS DB by Protein ID:NP_443120Link to BLAST:NP_443120.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_443120.2 947 Q96QE4-1 947 100% 0 0

Chromosomal Locations for CCDS 32609.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 32021147 32022825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32024711 32024782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32027769 32027840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32030656 32030727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32031378 32031458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32034910 32034981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32035565 32035639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32045700 32045818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32047761 32047901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32049102 32049394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32050003 32050107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32053266 32053328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2844 nt):
ATGTCTTGGCTGCGTTTCTGGGGCCCATGGCCCCTCCTTACGTGGCAACTATTGTCTTTACTAGTCAAGG
AGGCTCAGCCTCTGGTGTGGGTCAAGGACCCGCTCCAGCTGACCTCTAACCCCCTGGGGCCACCTGAGCC
CTGGTCTTCCCGCTCCTCCCATCTCCCATGGGAATCTCCCCATGCACCTGCTCCCCCAGCAGCCCCGGGG
GACTTTGATTACCTGGGGCCCTCTGCTTCTTCGCAGATGTCAGCCCTGCCTCAGGAACCAACTGAAAATT
TGGCTCCATTCCTGAAGGAATTGGATTCAGCTGGAGAGCTGCCCCTGGGGCCAGAGCCGTTCTTGGCTGC
ACATCAGGACTTAAATGACAAGCGGACTCCAGAAGAAAGGCTCCCAGAGGTGGTTCCGCTTCTCAACCGG
GATCAGAACCAGGCCCTAGTTCAGCTTCCTCGCCTCAAGTGGGTTCAAACTACAGATCTAGATCGGGCTG
CAGGTCATCAGGCAGATGAAATACTTGTTCCACTAGACAGTAAGGTTTCAAGACCAACCAAATTTGTTGT
TTCGCCCAAGAACCTGAAGAAAGATCTAGCTGAACGTTGGAGCCTTCCTGAGATTGTTGGGATTCCACAC
CAATTATCCAAACCTCAGCGTCAGAAACAGACTTTGCCAGATGATTATTTGAGTATGGACACACTGTATC
CCGGCAGCCTACCTCCAGAACTCCGGGTGAACGCAGATGAGCCTCCAGGGCCTCCTGAGCAAGTTGGACT
TTCTCAATTCCATCTAGAGCCCAAAAGTCAAAATCCAGAGACCCTTGAAGACATCCAGTCCTCTTCACTC
CAGGAAGAAGCCCCAGCGCAGCTTCTACAGCTCCCTCAGGAGGTAGAACCTTCAACCCAGCAGGAGGCCC
CAGCTCTGCCTCCAGAGTCCTCTATGGAGAGTCTAGCTCAAACTCCACTGAATCATGAAGTGACAGTTCA
ACCTCCAGGTGAGGATCAAGCTCATTATAATTTGCCCAAGTTTACAGTCAAACCTGCAGATGTGGAGGTT
ACCATGACTTCAGAGCCTAAAAATGAGACAGAATCTACCCAAGCCCAGCAGGAGGCCCCAATTCAGCCTC
CCGAGGAGGCGGAACCTTCTTCTACAGCCCTGAGGACTACAGATCCTCCTCCAGAACACCCTGAGGTGAC
ACTTCCACCTTCAGACAAGGGTCAGGCTCAGCATTCACACCTGACTGAAGCCACAGTTCAACCTCTGGAC
CTGGAGCTTAGCATAACTACAGAGCCTACTACAGAGGTTAAACCGTCTCCAACCACGGAGGAAACCTCAG
CTCAGCCTCCAGACCCGGGGCTTGCCATAACTCCAGAACCCACTACAGAGATTGGACATTCCACAGCCCT
GGAGAAGACTAGAGCTCCTCATCCAGACCAGGTTCAGACTCTGCATCGAAGCCTGACTGAAGTCACAGGT
CCACCTACAAAGTTAGAATCTTCGCAGGATTCATTGGTGCAGTCTGAAACTGCACCAGAGGAACAGAAGG
CCTCCACAAGCACCAACATATGTGAGCTCTGCACCTGCGGAGATGAGACTCTGTCATGTGTTGGTCTCAG
CCCAAAGCAGAGGCTCCGCCAAGTGCCTGTGCCAGAGCCCGACACCTACAATGGCATCTTCACCACCTTA
AATTTCCAAGGAAACTATATTTCATACCTTGATGGAAATGTATGGAAAGCATACAGTTGGACCGAGAAAC
TAATTCTCAGTGAAAATTATTTGACTGAATTACCTAAGGATTCATTTGAAGGCCTGCTATACCTCCAGTA
TTTAGATTTATCCTGCAATAAAATACGATATATTGAAAGACAAACATTTGAATCACTACCATTTTTGCAG
TATATAAATCTGGGCTGCAATTTAATTACAAAACTGAGCCTTGGAACATTTCAGGCCTGGCACGGAATGC
AGTTTTTACACAACTTAATTCTCAATCGCAATCCTCTGACTACTGTCGAAGATCCATATCTCTTTGAACT
GCCGGCATTAAAATATCTAGACATGGGAACAACACACATCACACTTACAACACTTAAGAACATTCTCACG
ATGACTGTTGAACTGGAAAAACTGATCTTACCTAGCCATATGGCCTGCTGCCTCTGCCAATTTAAAAATA
GCATTGAGGCTGTCTGCAAGACAGTCAAGCTGCATTGCAACACTGCATGTCTGACTAACAGCATACATTG
TCCTGAAGAAGCATCTGTAGGGAATCCAGAAGGAGCGTTCATGAAGATGTTACAAGCCCGGAAGCAGCAC
ATGAGCACTCAGCTGACTATTGAGTCGGAGGCGCCCTCAGACAGCAGTGGCATCAACTTGTCAGGCTTTG
GGGGTGATCAGCTTGAAATTCAGCTAACCGAGCAGCTACGGTCCCTCATCCCCAACGAGGATGTGAGAAA
GTTCATGTCTCATGTTATCCGGACCTTGAAAATGGAATGTTCAGAAACACATGTGCAAGGGAGCTGTGCC
AAGCTCATGTTGCGAACAGGCCTCCTGATGAAGCTTCTCAGCGAGCAGCAGGAAGCAAAGGCATTGAATG
TAGAATGGGATACGGACCAACAAAAAACAAATTATATTAATGAGAACATGGAACAGAATGAACAGAAAGA
GCAGAAGTCAAGTGAGCTCATGAAAGAAGTTCCAGGAGATGACTATAAGAACAAACTCATCTTCGCAATA
TCTGTGACTGTAATACTAATAATTTTGATTATAATTTTTTGTCTTATAGAGGTGAATTCACATAAAAGGG
CATCAGAAAAATACAAAGACAACCCATCAATATCAGGAGCCTGA

Translation (947 aa):
MSWLRFWGPWPLLTWQLLSLLVKEAQPLVWVKDPLQLTSNPLGPPEPWSSRSSHLPWESPHAPAPPAAPG
DFDYLGPSASSQMSALPQEPTENLAPFLKELDSAGELPLGPEPFLAAHQDLNDKRTPEERLPEVVPLLNR
DQNQALVQLPRLKWVQTTDLDRAAGHQADEILVPLDSKVSRPTKFVVSPKNLKKDLAERWSLPEIVGIPH
QLSKPQRQKQTLPDDYLSMDTLYPGSLPPELRVNADEPPGPPEQVGLSQFHLEPKSQNPETLEDIQSSSL
QEEAPAQLLQLPQEVEPSTQQEAPALPPESSMESLAQTPLNHEVTVQPPGEDQAHYNLPKFTVKPADVEV
TMTSEPKNETESTQAQQEAPIQPPEEAEPSSTALRTTDPPPEHPEVTLPPSDKGQAQHSHLTEATVQPLD
LELSITTEPTTEVKPSPTTEETSAQPPDPGLAITPEPTTEIGHSTALEKTRAPHPDQVQTLHRSLTEVTG
PPTKLESSQDSLVQSETAPEEQKASTSTNICELCTCGDETLSCVGLSPKQRLRQVPVPEPDTYNGIFTTL
NFQGNYISYLDGNVWKAYSWTEKLILSENYLTELPKDSFEGLLYLQYLDLSCNKIRYIERQTFESLPFLQ
YINLGCNLITKLSLGTFQAWHGMQFLHNLILNRNPLTTVEDPYLFELPALKYLDMGTTHITLTTLKNILT
MTVELEKLILPSHMACCLCQFKNSIEAVCKTVKLHCNTACLTNSIHCPEEASVGNPEGAFMKMLQARKQH
MSTQLTIESEAPSDSSGINLSGFGGDQLEIQLTEQLRSLIPNEDVRKFMSHVIRTLKMECSETHVQGSCA
KLMLRTGLLMKLLSEQQEAKALNVEWDTDQQKTNYINENMEQNEQKEQKSSELMKEVPGDDYKNKLIFAI
SVTVILIILIIIFCLIEVNSHKRASEKYKDNPSISGA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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