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Report for CCDS31885.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31885.1 Public Homo sapiens 12 PMCH 24 110 108 CCDS HistoryNCBI Gene:5367Re-query CCDS DB by CCDS ID:31885.1Re-query CCDS DB by GeneID:5367See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31885.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000329406.5 ENSP00000332225.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000329406.5Link to Ensembl Protein Viewer:ENSP00000332225.4Re-query CCDS DB by Nucleotide ID:ENST00000329406Re-query CCDS DB by Protein ID:ENSP00000332225
Original member Current member NCBI NM_002674.4 NP_002665.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002674.4Link to Protein Sequence:NP_002665.2Re-query CCDS DB by Nucleotide ID:NM_002674Re-query CCDS DB by Protein ID:NP_002665Link to BLAST:NP_002665.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002665.2 165 P20382 165 100% 0 0

Chromosomal Locations for CCDS 31885.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 102196652 102196701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 102196973 102197171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 102197522 102197770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (498 nt):
ATGGCAAAAATGAATCTCTCTTCCTATATATTAATACTAACTTTTTCTTTGTTTTCTCAAGGTATTTTAC
TTTCAGCATCCAAGTCCATAAGAAATTTAGATGATGACATGGTATTTAATACATTCAGGTTGGGGAAAGG
CTTTCAGAAGGAAGACACTGCAGAAAAATCAGTTATTGCTCCTTCCCTGGAACAATATAAAAATGATGAG
AGCAGTTTCATGAACGAAGAGGAAAATAAAGTTTCAAAGAACACAGGCTCCAAACATAATTTCTTAAATC
ATGGTCTGCCACTGAATCTGGCTATAAAACCTTATCTTGCACTAAAAGGATCTGTAGCTTTCCCAGCTGA
GAATGGAGTTCAGAATACTGAATCAACACAAGAAAAGAGAGAAATTGGGGATGAAGAAAACTCAGCTAAA
TTTCCTATAGGAAGGAGAGATTTTGACATGCTCAGATGTATGCTGGGAAGAGTCTACCGACCTTGTTGGC
AAGTCTGA

Translation (165 aa):
MAKMNLSSYILILTFSLFSQGILLSASKSIRNLDDDMVFNTFRLGKGFQKEDTAEKSVIAPSLEQYKNDE
SSFMNEEENKVSKNTGSKHNFLNHGLPLNLAIKPYLALKGSVAFPAENGVQNTESTQEKREIGDEENSAK
FPIGRRDFDMLRCMLGRVYRPCWQV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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