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Report for CCDS31472.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31472.1 Public Homo sapiens 11 PEX16 24 110 108 CCDS HistoryNCBI Gene:9409Re-query CCDS DB by CCDS ID:31472.1Re-query CCDS DB by GeneID:9409See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31472.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000378750.10 ENSP00000368024.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000378750.10Link to Ensembl Protein Viewer:ENSP00000368024.5Re-query CCDS DB by Nucleotide ID:ENST00000378750Re-query CCDS DB by Protein ID:ENSP00000368024
Original member Current member NCBI NM_004813.4 NP_004804.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004813.4Link to Protein Sequence:NP_004804.2Re-query CCDS DB by Nucleotide ID:NM_004813Re-query CCDS DB by Protein ID:NP_004804Link to BLAST:NP_004804.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004804.2 336 Q9Y5Y5-1 336 100% 0 0

Chromosomal Locations for CCDS 31472.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 45910254 45910312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 45910898 45910962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 45913819 45913938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 45914131 45914203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 45914316 45914468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 45914604 45914684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 45915468 45915568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 45915703 45915836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 45916227 45916303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 45917458 45917493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 45917700 45917811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1011 nt):
ATGGAGAAGCTGCGGCTCCTGGGCCTCCGCTACCAGGAGTACGTGACTCGTCACCCGGCCGCCACGGCCC
AGCTGGAGACAGCAGTGCGGGGCTTCAGTTACCTGCTGGCAGGTCGATTCGCCGATTCGCACGAGCTGTC
AGAGCTGGTGTACTCTGCCTCTAACCTGCTTGTGCTGCTCAATGACGGGATCCTACGGAAGGAGCTTCGG
AAAAAGTTGCCTGTGTCGCTGTCCCAGCAGAAGCTGCTGACATGGCTGAGCGTGCTGGAGTGCGTGGAGG
TGTTCATGGAGATGGGAGCTGCCAAGGTGTGGGGTGAAGTGGGCCGCTGGCTTGTCATCGCCCTCGTCCA
GCTGGCCAAGGCTGTACTGCGGATGCTCCTGCTGCTCTGGTTCAAGGCTGGCCTCCAGACTTCACCCCCT
ATCGTTCCACTGGACAGAGAGACCCAGGCACAGCCCCCGGATGGTGACCACAGCCCTGGCAACCATGAGC
AGTCCTACGTGGGGAAGCGGTCAAACCGGGTGGTGCGAACCCTCCAGAACACGCCGTCCCTGCACTCCAG
GCACTGGGGAGCTCCCCAGCAGCGGGAGGGACGGCAGCAGCAGCATCACGAGGAGCTGAGTGCGACCCCC
ACCCCCCTGGGGCTGCAGGAGACCATCGCAGAGTTTTTGTACATTGCCCGGCCGCTGCTGCACTTGCTCA
GCCTGGGCCTGTGGGGTCAGAGGTCGTGGAAACCCTGGCTCTTGGCTGGTGTTGTGGACGTGACCAGCCT
GAGCCTCCTGAGTGACAGAAAGGGCCTGACCCGGAGGGAGCGGCGGGAGCTGCGGCGCCGGACCATCCTG
CTGCTCTACTACCTGCTGCGCTCTCCTTTCTATGACCGCTTCTCCGAGGCCAGGATCCTCTTCCTGCTCC
AGTTGCTGGCCGACCACGTCCCTGGCGTTGGCCTGGTCACAAGGCCGCTCATGGATTACTTGCCCACCTG
GCAGAAAATCTACTTCTACAGTTGGGGCTGA

Translation (336 aa):
MEKLRLLGLRYQEYVTRHPAATAQLETAVRGFSYLLAGRFADSHELSELVYSASNLLVLLNDGILRKELR
KKLPVSLSQQKLLTWLSVLECVEVFMEMGAAKVWGEVGRWLVIALVQLAKAVLRMLLLLWFKAGLQTSPP
IVPLDRETQAQPPDGDHSPGNHEQSYVGKRSNRVVRTLQNTPSLHSRHWGAPQQREGRQQQHHEELSATP
TPLGLQETIAEFLYIARPLLHLLSLGLWGQRSWKPWLLAGVVDVTSLSLLSDRKGLTRRERRELRRRTIL
LLYYLLRSPFYDRFSEARILFLLQLLADHVPGVGLVTRPLMDYLPTWQKIYFYSWG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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