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Report for CCDS31383.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31383.1 Public Homo sapiens 11 OR51I2 24 110 108 CCDS HistoryNCBI Gene:390064Re-query CCDS DB by CCDS ID:31383.1Re-query CCDS DB by GeneID:390064See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)


Attributes
Polymorphic pseudogene

Sequence IDs included in CCDS 31383.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000641930.1 ENSP00000493016.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000641930.1Link to Ensembl Protein Viewer:ENSP00000493016.1Re-query CCDS DB by Nucleotide ID:ENST00000641930Re-query CCDS DB by Protein ID:ENSP00000493016
Original member Current member NCBI NM_001004754.3 NP_001004754.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001004754.3Link to Protein Sequence:NP_001004754.1Re-query CCDS DB by Nucleotide ID:NM_001004754Re-query CCDS DB by Protein ID:NP_001004754Link to BLAST:NP_001004754.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001004754.1 312 Q9H344 312 100% 0 0

Chromosomal Locations for CCDS 31383.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 5453489 5454427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (939 nt):
ATGGGGTTGTTCAATGTCACTCACCCTGCATTCTTCCTCCTGACTGGTATCCCTGGTCTGGAGAGCTCTC
ACTCCTGGCTGTCAGGGCCCCTCTGCGTGATGTATGCTGTGGCCCTTGGGGGAAATACAGTGATCCTGCA
GGCTGTGCGAGTGGAGCCCAGCCTCCATGAGCCCATGTACTACTTCCTGTCCATGTTGTCCTTCAGTGAT
GTGGCCATATCCATGGCCACACTGCCCACTGTACTCCGAACCTTCTGCCTCAATGCCCGCAACATCACTT
TTGATGCCTGTCTAATTCAGATGTTTCTTATTCACTTCTTCTCCATGATGGAATCAGGTATTCTGCTGGC
CATGAGTTTTGACCGCTATGTGGCCATTTGTGACCCCTTGCGCTATGCAACTGTGCTCACCACTGAAGTC
ATTGCTGCAATGGGTTTAGGTGCAGCTGCTCGAAGCTTCATCACCCTTTTCCCTCTTCCCTTTCTTATTA
AGAGGCTGCCTATCTGCAGATCCAATGTTCTTTCTCACTCCTACTGCCTGCACCCAGACATGATGAGGCT
TGCCTGTGCTGATATCAGTATCAACAGCATCTATGGACTCTTTGTTCTTGTATCCACCTTTGGCATGGAC
CTGTTTTTTATCTTCCTCTCCTATGTGCTCATTCTGCGTTCTGTCATGGCCACTGCTTCCCGTGAGGAAC
GCCTCAAAGCTCTCAACACATGTGTGTCACATATCCTGGCTGTACTTGCATTTTATGTGCCAATGATTGG
GGTCTCCACAGTGCACCGCTTTGGGAAGCATGTCCCATGCTACATACATGTCCTCATGTCAAATGTGTAC
CTATTTGTGCCTCCTGTGCTCAACCCTCTCATTTATAGCGCCAAGACAAAGGAAATCCGCCGAGCCATTT
TCCGCATGTTTCACCACATCAAAATATGA

Translation (312 aa):
MGLFNVTHPAFFLLTGIPGLESSHSWLSGPLCVMYAVALGGNTVILQAVRVEPSLHEPMYYFLSMLSFSD
VAISMATLPTVLRTFCLNARNITFDACLIQMFLIHFFSMMESGILLAMSFDRYVAICDPLRYATVLTTEV
IAAMGLGAAARSFITLFPLPFLIKRLPICRSNVLSHSYCLHPDMMRLACADISINSIYGLFVLVSTFGMD
LFFIFLSYVLILRSVMATASREERLKALNTCVSHILAVLAFYVPMIGVSTVHRFGKHVPCYIHVLMSNVY
LFVPPVLNPLIYSAKTKEIRRAIFRMFHHIKI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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