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Report for CCDS31072.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31072.1 Public Homo sapiens 1 OPN3 24 110 108 CCDS HistoryNCBI Gene:23596Re-query CCDS DB by CCDS ID:31072.1Re-query CCDS DB by GeneID:23596See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31072.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000366554.3 ENSP00000355512.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000366554.3Link to Ensembl Protein Viewer:ENSP00000355512.2Re-query CCDS DB by Nucleotide ID:ENST00000366554Re-query CCDS DB by Protein ID:ENSP00000355512
Original member Current member NCBI NM_014322.3 NP_055137.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014322.3Link to Protein Sequence:NP_055137.2Re-query CCDS DB by Nucleotide ID:NM_014322Re-query CCDS DB by Protein ID:NP_055137Link to BLAST:NP_055137.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055137.2 402 Q9H1Y3-1 402 100% 0 0

Chromosomal Locations for CCDS 31072.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 241594428 241594691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 241597746 241597997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 241604260 241604579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 241639882 241640254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1209 nt):
ATGTACTCGGGGAACCGCAGCGGCGGCCACGGCTACTGGGACGGCGGCGGGGCCGCGGGCGCTGAGGGGC
CGGCGCCGGCGGGGACACTGAGCCCCGCGCCCCTCTTCAGCCCCGGCACCTACGAGCGCCTGGCGCTGCT
GCTGGGCTCCATTGGGCTGCTGGGCGTCGGCAACAACCTGCTGGTGCTCGTCCTCTACTACAAGTTCCAG
CGGCTCCGCACTCCCACTCACCTCCTCCTGGTCAACATCAGCCTCAGCGACCTGCTGGTGTCCCTCTTCG
GGGTCACCTTTACCTTCGTGTCCTGCCTGAGGAACGGCTGGGTGTGGGACACCGTGGGCTGCGTGTGGGA
CGGGTTTAGCGGCAGCCTCTTCGGGATTGTTTCCATTGCCACCCTAACCGTGCTGGCCTATGAACGTTAC
ATTCGCGTGGTCCATGCCAGAGTGATCAATTTTTCCTGGGCCTGGAGGGCCATTACCTACATCTGGCTCT
ACTCACTGGCGTGGGCAGGAGCACCTCTCCTGGGATGGAACAGGTACATCCTGGACGTACACGGACTAGG
CTGCACTGTGGACTGGAAATCCAAGGATGCCAACGATTCCTCCTTTGTGCTTTTCTTATTTCTTGGCTGC
CTGGTGGTGCCCCTGGGTGTCATAGCCCATTGCTATGGCCATATTCTATATTCCATTCGAATGCTTCGTT
GTGTGGAAGATCTTCAGACAATTCAAGTGATCAAGATTTTAAAATATGAAAAGAAACTGGCCAAAATGTG
CTTTTTAATGATATTCACCTTCCTGGTCTGTTGGATGCCTTATATCGTGATCTGCTTCTTGGTGGTTAAT
GGTCATGGTCACCTGGTCACTCCAACAATATCTATTGTTTCGTACCTCTTTGCTAAATCGAACACTGTAT
ACAATCCAGTGATTTATGTCTTCATGATCAGAAAGTTTCGAAGATCCCTTTTGCAGCTTCTGTGCCTCCG
ACTGCTGAGGTGCCAGAGGCCTGCTAAAGACCTACCAGCAGCTGGAAGTGAAATGCAGATCAGACCCATT
GTGATGTCACAGAAAGATGGGGACAGGCCAAAGAAAAAAGTGACTTTCAACTCTTCTTCCATCATTTTTA
TCATCACCAGTGATGAATCACTGTCAGTTGACGACAGCGACAAAACCAATGGGTCCAAAGTTGATGTAAT
CCAAGTTCGTCCTTTGTAG

Translation (402 aa):
MYSGNRSGGHGYWDGGGAAGAEGPAPAGTLSPAPLFSPGTYERLALLLGSIGLLGVGNNLLVLVLYYKFQ
RLRTPTHLLLVNISLSDLLVSLFGVTFTFVSCLRNGWVWDTVGCVWDGFSGSLFGIVSIATLTVLAYERY
IRVVHARVINFSWAWRAITYIWLYSLAWAGAPLLGWNRYILDVHGLGCTVDWKSKDANDSSFVLFLFLGC
LVVPLGVIAHCYGHILYSIRMLRCVEDLQTIQVIKILKYEKKLAKMCFLMIFTFLVCWMPYIVICFLVVN
GHGHLVTPTISIVSYLFAKSNTVYNPVIYVFMIRKFRRSLLQLLCLRLLRCQRPAKDLPAAGSEMQIRPI
VMSQKDGDRPKKKVTFNSSSIIFIITSDESLSVDDSDKTNGSKVDVIQVRPL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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