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Report for CCDS30877.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30877.1 Public Homo sapiens 1 SHE 24 110 108 CCDS HistoryNCBI Gene:126669Re-query CCDS DB by CCDS ID:30877.1Re-query CCDS DB by GeneID:126669See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30877.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000304760.3 ENSP00000307369.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000304760.3Link to Ensembl Protein Viewer:ENSP00000307369.2Re-query CCDS DB by Nucleotide ID:ENST00000304760Re-query CCDS DB by Protein ID:ENSP00000307369
Original member Current member NCBI NM_001010846.3 NP_001010846.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001010846.3Link to Protein Sequence:NP_001010846.1Re-query CCDS DB by Nucleotide ID:NM_001010846Re-query CCDS DB by Protein ID:NP_001010846Link to BLAST:NP_001010846.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001010846.1 495 Q5VZ18 495 100% 0 0

Chromosomal Locations for CCDS 30877.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 154484149 154484335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 154485943 154486062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 154486527 154486683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 154489051 154489356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 154499112 154499238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 154501436 154502026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1488 nt):
ATGCAGTGGTCCCCGACCCCTGGCGCCTCTGCGTGTCTGGGCTGGGCTTCCTCGCTCGCCTGCTCCACGG
CCCCGACGCTCCTGGGCCGAGCCGGCCGGGGCCCCCTCATGGCGGCCAAGTGGTTCAAGGAGTTCCCCCT
GAACCTGAAGACCGTGTCGGAGCGGGCCAAGCCCGGGGGCGGCGGCGGCAAATTGCGCAAGAACTCGGAG
GCGGGCGGCGCTGGGCCGGGTCCTGGCAAGGGCCGCAAGAACTCGGCGGCCGAGCTGGGGAGCGGCAGGG
CCGGCGTCGGCCCCAAGGACAGCCGGCTGTCCCGCGACAGCCTGCAGGGTCTGATTCAGGCCGCCGCGGG
CAAGGGCCGCAAAAACTCCCGGGCCACGGAGGAGGAGCCCCACCGGGGTGCAACCAAGAGCTCGGGCTGC
AGCACCTACATCAACAGGCTCATCAAGGTGGACACTCAGGAGAAGAACGGGAAGAGCAACTACCCCAGCA
GCAGTAGCTCCAGCTCCAGCTCCTCTTCCTCCGCGTCCTCTTCCCCTTCCTCCCTGGGGCCCGAGCTGGA
CAAGGGCAAGATTATTAAGCAGCAAGAGACGGTCATCATTTTAGAAGACTATGCTGACCCTTATGATGCC
AAACGGACAAAGGGTCAAAGGGATGCAGAGAGAGTCGGAGAGAACGACGGTTACATGGAACCATATGATG
CACAGCAAATGATAACAGAAATTAGACGACGGGGTTCCAAAGATCCCCTGGTGAAGGCTCTCCAGCTGCT
TGACAGTCCCTGTGAACCCGCAGACGGTGGCCTGAAATCAGAGACCTTGGCCAAAAGACGGAGTTCCAAG
GACCTCCTGGGGAAGCCGCCACAGCTATACGACACTCCCTACGAGCCTGCAGAAGGGGGGCCCAGGGCAG
AGGGGAAGGCGCGGCCCCCAGACAGCCGGCTGCCCGAGAACGACGAGAGGCCCGCGGCAGAGTACGAGCA
GCCATGGGAGTGGAAGAAGGAGCAGATCGTGCGGGCTCTGTCAGTCCAGTTTGAAGGAGCTGAGCGACCT
TCCTTCAGGGAGGAGACAGTGAGGCAGCACCACCGGCAGAAGAGCTGGACCCAGAAGATCCTGAAGCCAG
CCCTCTCGGACCACAGTGAGGGAGAGAAAGTGGACCCGGGCCTGCCCCTGGAGAAGCAGCCCTGGTATCA
TGGTGCCATCAGCCGTGCTGAGGCTGAGAGTCGACTACAGCCCTGCAAAGAAGCTGGTTACCTGGTTCGA
AATAGTGAGTCAGGGAACAGCAGGTACTCCATTGCCCTAAAGACTAGTCAAGGATGTGTCCACATCATAG
TGGCTCAGACCAAAGACAACAAATACACACTGAATCAGACAAGCGCTGTGTTTGACAGCATCCCTGAAGT
GGTACACTATTATTCCAATGAAAAGTTGCCTTTCAAAGGGGCAGAACACATGACTTTACTCTACCCAGTG
CACAGCAAGCTTCACTAA

Translation (495 aa):
MQWSPTPGASACLGWASSLACSTAPTLLGRAGRGPLMAAKWFKEFPLNLKTVSERAKPGGGGGKLRKNSE
AGGAGPGPGKGRKNSAAELGSGRAGVGPKDSRLSRDSLQGLIQAAAGKGRKNSRATEEEPHRGATKSSGC
STYINRLIKVDTQEKNGKSNYPSSSSSSSSSSSSASSSPSSLGPELDKGKIIKQQETVIILEDYADPYDA
KRTKGQRDAERVGENDGYMEPYDAQQMITEIRRRGSKDPLVKALQLLDSPCEPADGGLKSETLAKRRSSK
DLLGKPPQLYDTPYEPAEGGPRAEGKARPPDSRLPENDERPAAEYEQPWEWKKEQIVRALSVQFEGAERP
SFREETVRQHHRQKSWTQKILKPALSDHSEGEKVDPGLPLEKQPWYHGAISRAEAESRLQPCKEAGYLVR
NSESGNSRYSIALKTSQGCVHIIVAQTKDNKYTLNQTSAVFDSIPEVVHYYSNEKLPFKGAEHMTLLYPV
HSKLH


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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