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Report for CCDS3021.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3021.1 Public Homo sapiens 3 SEC22A 24 110 108 CCDS HistoryNCBI Gene:26984Re-query CCDS DB by CCDS ID:3021.1Re-query CCDS DB by GeneID:26984See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3021.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000309934.4 ENSP00000310521.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000309934.4Link to Ensembl Protein Viewer:ENSP00000310521.4Re-query CCDS DB by Nucleotide ID:ENST00000309934Re-query CCDS DB by Protein ID:ENSP00000310521
Original member Current member EBI ENST00000492595.6 ENSP00000417972.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000492595.6Link to Ensembl Protein Viewer:ENSP00000417972.1Re-query CCDS DB by Nucleotide ID:ENST00000492595Re-query CCDS DB by Protein ID:ENSP00000417972
Original member Current member NCBI NM_012430.5 NP_036562.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_012430.5Link to Protein Sequence:NP_036562.2Re-query CCDS DB by Nucleotide ID:NM_012430Re-query CCDS DB by Protein ID:NP_036562Link to BLAST:NP_036562.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036562.2 307 Q96IW7 307 100% 0 0

Chromosomal Locations for CCDS 3021.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 123209218 123209399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 123223559 123223722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 123225103 123225297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 123245899 123246014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 123259524 123259589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 123271522 123271722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (924 nt):
ATGTCTATGATTTTATCTGCCTCAGTCATTCGTGTCAGAGATGGACTGCCACTTTCTGCTTCTACTGATT
ATGAACAAAGCACAGGAATGCAGGAGTGCAGAAAGTATTTTAAAATGCTTTCGAGGAAACTTGCTCAACT
TCCTGATAGATGTACACTGAAAACTGGACATTATAACATTAATTTTATTAGCTCTCTGGGAGTGAGCTAC
ATGATGTTGTGCACTGAAAATTACCCAAATGTTCTCGCCTTCTCTTTCCTGGATGAGCTTCAGAAGGAGT
TCATTACTACTTATAACATGATGAAGACAAATACTGCTGTCAGACCATACTGTTTCATTGAATTTGATAA
CTTCATTCAGAGGACCAAGCAGCGATATAATAATCCCAGGTCTCTTTCAACAAAGATAAATCTTTCTGAC
ATGCAGACGGAAATCAAGCTGAGGCCTCCTTATCAAATTTCCATGTGCGAACTGGGGTCAGCCAATGGAG
TCACATCAGCATTTTCTGTTGACTGTAAAGGTGCTGGTAAGATTTCTTCTGCTCACCAGCGACTGGAACC
AGCAACTCTGTCAGGGATTGTAGGATTTATCCTTAGTCTTTTATGTGGAGCTCTGAATTTAATTCGAGGC
TTTCATGCTATAGAAAGTCTCCTGCAGAGTGATGGTGATGATTTTAATTACATCATTGCATTTTTCCTTG
GAACAGCAGCCTGCCTTTACCAGTGTTATTTACTTGTCTACTACACCGGCTGGCGGAATGTCAAATCTTT
TTTGACTTTTGGCTTAATCTGTCTATGCAACATGTATCTCTATGAACTGCGCAACCTCTGGCAGCTTTTC
TTTCATGTGACTGTGGGAGCATTTGTTACACTACAGATCTGGCTAAGGCAAGCCCAGGGCAAGGCTCCCG
ATTATGATGTCTGA

Translation (307 aa):
MSMILSASVIRVRDGLPLSASTDYEQSTGMQECRKYFKMLSRKLAQLPDRCTLKTGHYNINFISSLGVSY
MMLCTENYPNVLAFSFLDELQKEFITTYNMMKTNTAVRPYCFIEFDNFIQRTKQRYNNPRSLSTKINLSD
MQTEIKLRPPYQISMCELGSANGVTSAFSVDCKGAGKISSAHQRLEPATLSGIVGFILSLLCGALNLIRG
FHAIESLLQSDGDDFNYIIAFFLGTAACLYQCYLLVYYTGWRNVKSFLTFGLICLCNMYLYELRNLWQLF
FHVTVGAFVTLQIWLRQAQGKAPDYDV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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