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Report for CCDS2445.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2445.1 Public Homo sapiens 2 SLC4A3 24 110 108 CCDS HistoryNCBI Gene:6508Re-query CCDS DB by CCDS ID:2445.1Re-query CCDS DB by GeneID:6508See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2445.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000317151.7 ENSP00000314006.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000317151.7Link to Ensembl Protein Viewer:ENSP00000314006.3Re-query CCDS DB by Nucleotide ID:ENST00000317151Re-query CCDS DB by Protein ID:ENSP00000314006
Original member Current member EBI ENST00000358055.8 ENSP00000350756.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000358055.8Link to Ensembl Protein Viewer:ENSP00000350756.3Re-query CCDS DB by Nucleotide ID:ENST00000358055Re-query CCDS DB by Protein ID:ENSP00000350756
Original member Current member EBI ENST00000373760.6 ENSP00000362865.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000373760.6Link to Ensembl Protein Viewer:ENSP00000362865.2Re-query CCDS DB by Nucleotide ID:ENST00000373760Re-query CCDS DB by Protein ID:ENSP00000362865
Original member Current member NCBI NM_005070.4 NP_005061.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005070.4Link to Protein Sequence:NP_005061.3Re-query CCDS DB by Nucleotide ID:NM_005070Re-query CCDS DB by Protein ID:NP_005061Link to BLAST:NP_005061.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005061.3 1232 P48751-1 1232 100% 0 0

Chromosomal Locations for CCDS 2445.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 219627993 219628043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219628405 219628570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219629144 219629421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219629580 219629695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219630153 219630352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219631968 219632116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219632262 219632442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219632874 219633009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219633274 219633457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219633880 219633979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219634420 219634604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219635271 219635496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219635673 219635891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219636302 219636450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219636680 219636874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219637581 219637811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219638164 219638253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219638703 219638869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219639482 219639735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219640430 219640599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219640789 219640962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219641651 219641728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3699 nt):
ATGGCCAACGGAGTGATCCCGCCGCCCGGGGGCGCCTCCCCCCTACCCCAGGTCCGGGTGCCCTTGGAGG
AGCCCCCTCTAAGTCCAGACGTGGAGGAGGAGGACGATGACTTGGGCAAGACCTTGGCTGTGAGCAGGTT
TGGGGACCTCATCAGCAAGCCCCCGGCCTGGGACCCCGAGAAGCCCAGCCGCAGCTACAGCGAGCGGGAC
TTTGAGTTTCACCGGCACACATCCCACCACACCCACCACCCGCTCTCAGCGCGCCTGCCTCCACCCCACA
AGCTGCGGCGGCTGCCCCCCACCTCTGCCCGGCACACCAGGAGAAAGAGGAAGAAGGAGAAAACCTCTGC
TCCTCCCTCCGAGGGGACCCCTCCCATCCAGGAGGAGGGGGGAGCTGGAGTGGATGAGGAAGAGGAGGAA
GAGGAGGAAGAGGAAGGAGAATCTGAGGCAGAACCTGTGGAGCCCCCCCACTCAGGGACCCCACAGAAGG
CAAAGTTCTCCATTGGAAGTGACGAGGATGACAGTCCAGGCCTCCCTGGGAGGGCTGCTGTCACCAAGCC
CCTGCCCTCGGTGGGCCCACACACTGACAAGAGCCCCCAGCACTCCAGCAGCTCCCCCAGCCCCCGGGCC
CGGGCCTCCCGACTCGCTGGGGAGAAAAGCCGGCCCTGGAGCCCATCGGCCAGTTATGACCTGCGGGAGC
GACTGTGCCCAGGCAGTGCCCTGGGCAACCCAGGTGGTCCAGAGCAGCAGGTGCCCACAGATGAGGCGGA
GGCCCAGATGCTGGGTTCTGCAGACCTGGACGACATGAAGAGTCACCGACTGGAGGACAACCCTGGTGTG
CGGCGACACTTAGTGAAAAAGCCCTCCCGGACGCAGGGCGGGAGGGGCAGTCCCAGCGGCCTGGCCCCCA
TCCTTCGCAGGAAGAAGAAGAAGAAAAAGCTGGACCGGAGGCCTCATGAGGTGTTCGTGGAGCTGAACGA
GCTGATGCTGGACCGCAGCCAGGAGCCCCACTGGCGGGAGACGGCCCGCTGGATCAAGTTTGAGGAGGAC
GTGGAGGAGGAGACGGAGCGCTGGGGGAAGCCCCATGTTGCCTCGCTCTCCTTCCGTAGCCTTCTGGAGC
TCAGGAGGACCATCGCCCATGGAGCTGCCCTCCTGGACCTGGAGCAAACCACCCTGCCAGGCATTGCACA
CCTCGTGGTGGAGACCATGATTGTGTCTGACCAGATCCGGCCGGAGGACAGGGCCAGCGTCCTACGTACC
CTGCTACTGAAGCACAGCCATCCCAACGATGACAAGGACAGTGGCTTCTTTCCCCGAAACCCATCGAGCT
CCAGCATGAACTCGGTTCTGGGGAATCATCACCCAACTCCCAGCCATGGCCCTGATGGGGCGGTGCCTAC
CATGGCTGATGACCTGGGGGAGCCAGCCCCACTCTGGCCACATGACCCTGACGCCAAGGAGAAGCCCCTC
CACATGCCTGGGGGAGATGGTCACCGGGGGAAAAGCCTGAAGCTGCTGGAGAAGATCCCTGAAGATGCTG
AGGCCACGGTTGTGCTTGTGGGTTGTGTGCCTTTCTTGGAGCAGCCTGCAGCAGCCTTCGTGCGTCTGAA
TGAGGCTGTACTCCTGGAGTCTGTGCTTGAGGTCCCTGTCCCGGTCCGCTTCCTCTTCGTGATGCTGGGG
CCCAGCCACACCAGCACTGACTATCACGAGCTTGGGCGCTCCATTGCCACCCTTATGTCTGACAAGCTGT
TTCATGAGGCTGCCTACCAGGCAGATGACCGGCAAGACCTCCTAAGTGCCATCAGCGAGTTCCTGGATGG
CAGCATTGTGATCCCCCCGTCCGAGGTGGAGGGCCGTGACCTGCTGCGCTCCGTGGCTGCTTTCCAGCGA
GAGCTGCTTAGGAAGCGGCGAGAGCGTGAACAGACCAAAGTCGAGATGACCACACGGGGTGGCTACACGG
CCCCTGGGAAAGAACTGTCTTTGGAGTTGGGGGGCTCTGAGGCAACCCCTGAAGATGACCCCTTGCTGCG
GACGGGCTCGGTATTTGGGGGGCTTGTGCGGGATGTGAGGCGCCGGTACCCGCACTACCCCAGTGACCTG
CGAGATGCGCTGCACTCCCAGTGTGTGGCCGCTGTGCTCTTCATCTACTTCGCAGCCCTCAGCCCTGCCA
TCACCTTCGGGGGGCTGCTGGGAGAGAAGACCGAGGGGCTGATGGGCGTGTCCGAGCTGATCGTGTCCAC
CGCTGTGCTCGGCGTCCTCTTCTCTCTGCTGGGAGCTCAGCCGCTGCTTGTGGTTGGCTTCTCTGGGCCG
CTGCTTGTGTTTGAGGAAGCCTTCTTCAAGTTCTGCCGAGCCCAGGACCTGGAGTACCTCACTGGCCGGG
TGTGGGTTGGTCTCTGGCTGGTGGTCTTCGTCCTTGCCCTGGTGGCCGCCGAAGGCAGCTTCCTGGTCCG
CTACATCTCGCCTTTCACCCAGGAGATCTTTGCCTTTCTCATCTCACTCATTTTCATCTACGAGACCTTC
TACAAGCTCTACAAGGTGTTCACAGAGCACCCACTGCTGCCGTTCTACCCCCCTGAGGGGGCCCTGGAGG
GGTCCCTGGATGCTGGTCTGGAGCCAAATGGCAGTGCCCTGCCCCCCACCGAGGGCCCCCCCAGCCCGAG
GAACCAGCCCAATACGGCACTGCTCTCACTCATCCTCATGCTCGGGACCTTCTTCATAGCCTTCTTCCTG
CGCAAGTTCAGGAACAGCCGCTTCCTGGGGGGCAAGGCTCGTCGCATCATCGGGGACTTTGGCATCCCCA
TCTCCATCCTGGTGATGGTCCTGGTGGATTACTCCATCACAGACACCTACACGCAGAAGCTGACAGTGCC
TACAGGGCTCTCAGTGACCTCTCCCGATAAGCGCTCGTGGTTCATCCCACCCCTGGGCAGTGCCCGTCCT
TTCCCGCCGTGGATGATGGTGGCAGCCGCTGTTCCCGCCCTCCTCGTCCTCATCCTGATCTTCATGGAGA
CACAGATCACGGCGCTTATCGTCAGCCAGAAGGCGCGGAGGCTGCTCAAGGGCTCCGGTTTCCACCTGGA
CCTGCTCCTCATTGGCTCCCTGGGGGGGCTCTGTGGGCTGTTTGGGTTGCCCTGGCTCACGGCTGCCACG
GTCCGCTCCGTCACCCATGTCAATGCGTTGACAGTGATGCGTACTGCCATCGCGCCTGGTGACAAGCCCC
AGATCCAGGAGGTGCGGGAGCAGCGGGTCACTGGTGTGCTCATCGCCAGCCTCGTGGGCCTGTCCATCGT
CATGGGGGCTGTGCTGCGTCGGATCCCATTGGCTGTGCTCTTTGGGATCTTCCTGTACATGGGGGTCACG
TCCCTGTCTGGTATCCAGCTGTCCCAGCGTTTGTTGCTCATCCTCATGCCGGCAAAACACCATCCTGAGC
AGCCCTATGTGACCAAGGTGAAGACGTGGCGGATGCATCTGTTCACCTGCATCCAGCTGGGCTGCATCGC
ACTGCTCTGGGTGGTCAAGTCCACGGCGGCCTCACTCGCCTTTCCCTTCCTGCTGCTGCTCACGGTGCCT
CTGAGGCATTGCCTTCTGCCCCGGCTCTTCCAGGACAGGGAGCTGCAGGCGCTGGACTCGGAAGATGCTG
AACCAAACTTCGATGAGGATGGCCAGGATGAGTACAATGAGCTGCACATGCCAGTGTGA

Translation (1232 aa):
MANGVIPPPGGASPLPQVRVPLEEPPLSPDVEEEDDDLGKTLAVSRFGDLISKPPAWDPEKPSRSYSERD
FEFHRHTSHHTHHPLSARLPPPHKLRRLPPTSARHTRRKRKKEKTSAPPSEGTPPIQEEGGAGVDEEEEE
EEEEEGESEAEPVEPPHSGTPQKAKFSIGSDEDDSPGLPGRAAVTKPLPSVGPHTDKSPQHSSSSPSPRA
RASRLAGEKSRPWSPSASYDLRERLCPGSALGNPGGPEQQVPTDEAEAQMLGSADLDDMKSHRLEDNPGV
RRHLVKKPSRTQGGRGSPSGLAPILRRKKKKKKLDRRPHEVFVELNELMLDRSQEPHWRETARWIKFEED
VEEETERWGKPHVASLSFRSLLELRRTIAHGAALLDLEQTTLPGIAHLVVETMIVSDQIRPEDRASVLRT
LLLKHSHPNDDKDSGFFPRNPSSSSMNSVLGNHHPTPSHGPDGAVPTMADDLGEPAPLWPHDPDAKEKPL
HMPGGDGHRGKSLKLLEKIPEDAEATVVLVGCVPFLEQPAAAFVRLNEAVLLESVLEVPVPVRFLFVMLG
PSHTSTDYHELGRSIATLMSDKLFHEAAYQADDRQDLLSAISEFLDGSIVIPPSEVEGRDLLRSVAAFQR
ELLRKRREREQTKVEMTTRGGYTAPGKELSLELGGSEATPEDDPLLRTGSVFGGLVRDVRRRYPHYPSDL
RDALHSQCVAAVLFIYFAALSPAITFGGLLGEKTEGLMGVSELIVSTAVLGVLFSLLGAQPLLVVGFSGP
LLVFEEAFFKFCRAQDLEYLTGRVWVGLWLVVFVLALVAAEGSFLVRYISPFTQEIFAFLISLIFIYETF
YKLYKVFTEHPLLPFYPPEGALEGSLDAGLEPNGSALPPTEGPPSPRNQPNTALLSLILMLGTFFIAFFL
RKFRNSRFLGGKARRIIGDFGIPISILVMVLVDYSITDTYTQKLTVPTGLSVTSPDKRSWFIPPLGSARP
FPPWMMVAAAVPALLVLILIFMETQITALIVSQKARRLLKGSGFHLDLLLIGSLGGLCGLFGLPWLTAAT
VRSVTHVNALTVMRTAIAPGDKPQIQEVREQRVTGVLIASLVGLSIVMGAVLRRIPLAVLFGIFLYMGVT
SLSGIQLSQRLLLILMPAKHHPEQPYVTKVKTWRMHLFTCIQLGCIALLWVVKSTAASLAFPFLLLLTVP
LRHCLLPRLFQDRELQALDSEDAEPNFDEDGQDEYNELHMPV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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