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Report for CCDS2099.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2099.1 Public Homo sapiens 2 SLC20A1 24 110 108 CCDS HistoryNCBI Gene:6574Re-query CCDS DB by CCDS ID:2099.1Re-query CCDS DB by GeneID:6574See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2099.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000272542.8 ENSP00000272542.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000272542.8Link to Ensembl Protein Viewer:ENSP00000272542.3Re-query CCDS DB by Nucleotide ID:ENST00000272542Re-query CCDS DB by Protein ID:ENSP00000272542
Original member Current member NCBI NM_005415.5 NP_005406.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005415.5Link to Protein Sequence:NP_005406.3Re-query CCDS DB by Nucleotide ID:NM_005415Re-query CCDS DB by Protein ID:NP_005406Link to BLAST:NP_005406.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005406.3 679 Q8WUM9 679 100% 0 0

Chromosomal Locations for CCDS 2099.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 112646829 112647162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112647324 112647464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112647653 112647738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112652702 112652798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112657122 112657241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112658825 112659094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112659204 112659762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112660387 112660572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112661142 112661226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112662864 112663025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2040 nt):
ATGGCAACGCTGATTACCAGTACTACAGCTGCTACCGCCGCTTCTGGTCCTTTGGTGGACTACCTATGGA
TGCTCATCCTGGGCTTCATTATTGCATTTGTCTTGGCATTCTCCGTGGGAGCCAATGATGTAGCAAATTC
TTTTGGTACAGCTGTGGGCTCAGGTGTAGTGACCCTGAAGCAAGCCTGCATCCTAGCTAGCATCTTTGAA
ACAGTGGGCTCTGTCTTACTGGGGGCCAAAGTGAGCGAAACCATCCGGAAGGGCTTGATTGACGTGGAGA
TGTACAACTCGACTCAAGGGCTGCTGATGGCCGGCTCAGTCAGTGCTATGTTTGGTTCTGCTGTGTGGCA
ACTCGTGGCTTCGTTTTTGAAGCTCCCTATTTCTGGAACCCATTGTATTGTTGGTGCAACTATTGGTTTC
TCCCTCGTGGCAAAGGGGCAGGAGGGTGTCAAGTGGTCTGAACTGATAAAAATTGTGATGTCTTGGTTCG
TGTCCCCACTGCTTTCTGGAATTATGTCTGGAATTTTATTCTTCCTGGTTCGTGCATTCATCCTCCATAA
GGCAGATCCAGTTCCTAATGGTTTGCGAGCTTTGCCAGTTTTCTATGCCTGCACAGTTGGAATAAACCTC
TTTTCCATCATGTATACTGGAGCACCGTTGCTGGGCTTTGACAAACTTCCTCTGTGGGGTACCATCCTCA
TCTCGGTGGGATGTGCAGTTTTCTGTGCCCTTATCGTCTGGTTCTTTGTATGTCCCAGGATGAAGAGAAA
AATTGAACGAGAAATAAAGTGTAGTCCTTCTGAAAGCCCCTTAATGGAAAAAAAGAATAGCTTGAAAGAA
GACCATGAAGAAACAAAGTTGTCTGTTGGTGATATTGAAAACAAGCATCCTGTTTCTGAGGTAGGGCCTG
CCACTGTGCCCCTCCAGGCTGTGGTGGAGGAGAGAACAGTCTCATTCAAACTTGGAGATTTGGAGGAAGC
TCCAGAGAGAGAGAGGCTTCCCAGCGTGGACTTGAAAGAGGAAACCAGCATAGATAGCACCGTGAATGGT
GCAGTGCAGTTGCCTAATGGGAACCTTGTCCAGTTCAGTCAAGCCGTCAGCAACCAAATAAACTCCAGTG
GCCACTACCAGTATCACACCGTGCATAAGGATTCCGGCCTGTACAAAGAGCTACTCCATAAATTACATCT
TGCCAAGGTGGGAGATTGCATGGGAGACTCCGGTGACAAACCCTTAAGGCGCAATAATAGCTATACTTCC
TATACCATGGCAATATGTGGCATGCCTCTGGATTCATTCCGTGCCAAAGAAGGTGAACAGAAGGGCGAAG
AAATGGAGAAGCTGACATGGCCTAATGCAGACTCCAAGAAGCGAATTCGAATGGACAGTTACACCAGTTA
CTGCAATGCTGTGTCTGACCTTCACTCAGCATCTGAGATAGACATGAGTGTCAAGGCAGAGATGGGTCTA
GGTGACAGAAAAGGAAGTAATGGCTCTCTAGAAGAATGGTATGACCAGGATAAGCCTGAAGTCTCTCTCC
TCTTCCAGTTCCTGCAGATCCTTACAGCCTGCTTTGGGTCATTCGCCCATGGTGGCAATGACGTAAGCAA
TGCCATTGGGCCTCTGGTTGCTTTATATTTGGTTTATGACACAGGAGATGTTTCTTCAAAAGTGGCAACA
CCAATATGGCTTCTACTCTATGGTGGTGTTGGTATCTGTGTTGGTCTGTGGGTTTGGGGAAGAAGAGTTA
TCCAGACCATGGGGAAGGATCTGACACCGATCACACCCTCTAGTGGCTTCAGTATTGAACTGGCATCTGC
CCTCACTGTGGTGATTGCATCAAATATTGGCCTTCCCATCAGTACAACACATTGTAAAGTGGGCTCTGTT
GTGTCTGTTGGCTGGCTCCGGTCCAAGAAGGCTGTTGACTGGCGTCTCTTTCGTAACATTTTTATGGCCT
GGTTTGTCACAGTCCCCATTTCTGGAGTTATCAGTGCTGCCATCATGGCAATCTTCAGATATGTCATCCT
CAGAATGTGA

Translation (679 aa):
MATLITSTTAATAASGPLVDYLWMLILGFIIAFVLAFSVGANDVANSFGTAVGSGVVTLKQACILASIFE
TVGSVLLGAKVSETIRKGLIDVEMYNSTQGLLMAGSVSAMFGSAVWQLVASFLKLPISGTHCIVGATIGF
SLVAKGQEGVKWSELIKIVMSWFVSPLLSGIMSGILFFLVRAFILHKADPVPNGLRALPVFYACTVGINL
FSIMYTGAPLLGFDKLPLWGTILISVGCAVFCALIVWFFVCPRMKRKIEREIKCSPSESPLMEKKNSLKE
DHEETKLSVGDIENKHPVSEVGPATVPLQAVVEERTVSFKLGDLEEAPERERLPSVDLKEETSIDSTVNG
AVQLPNGNLVQFSQAVSNQINSSGHYQYHTVHKDSGLYKELLHKLHLAKVGDCMGDSGDKPLRRNNSYTS
YTMAICGMPLDSFRAKEGEQKGEEMEKLTWPNADSKKRIRMDSYTSYCNAVSDLHSASEIDMSVKAEMGL
GDRKGSNGSLEEWYDQDKPEVSLLFQFLQILTACFGSFAHGGNDVSNAIGPLVALYLVYDTGDVSSKVAT
PIWLLLYGGVGICVGLWVWGRRVIQTMGKDLTPITPSSGFSIELASALTVVIASNIGLPISTTHCKVGSV
VSVGWLRSKKAVDWRLFRNIFMAWFVTVPISGVISAAIMAIFRYVILRM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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