NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS2098.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2098.1 Public Homo sapiens 2 CHCHD5 24 110 108 CCDS HistoryNCBI Gene:84269Re-query CCDS DB by CCDS ID:2098.1Re-query CCDS DB by GeneID:84269See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2098.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000324913.10 ENSP00000325655.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000324913.10Link to Ensembl Protein Viewer:ENSP00000325655.5Re-query CCDS DB by Nucleotide ID:ENST00000324913Re-query CCDS DB by Protein ID:ENSP00000325655
Original member Current member NCBI NM_032309.4 NP_115685.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032309.4Link to Protein Sequence:NP_115685.1Re-query CCDS DB by Nucleotide ID:NM_032309Re-query CCDS DB by Protein ID:NP_115685Link to BLAST:NP_115685.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_115685.1 110 Q9BSY4-1 110 100% 0 0

Chromosomal Locations for CCDS 2098.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 112584648 112584649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112585974 112586114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112586200 112586365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112588866 112588889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (333 nt):
ATGCAGGCGGCCCTAGAGGTCACCGCTCGCTACTGTGGCCGGGAGCTGGAGCAGTATGGCCAGTGTGTGG
CGGCCAAGCCGGAATCCTGGCAGCGGGACTGTCACTACCTTAAGATGAGCATTGCCCAGTGCACATCCTC
CCACCCAATCATCCGCCAGATCCGCCAGGCCTGTGCTCAGCCTTTTGAGGCCTTCGAGGAGTGTCTTCGA
CAGAACGAGGCAGCTGTGGGCAACTGTGCAGAGCATATGCGCCGCTTCCTGCAGTGCGCTGAGCAGGTGC
AGCCGCCACGCTCACCTGCAACTGTGGAGGCACAGCCACTTCCTGCCTCCTGA

Translation (110 aa):
MQAALEVTARYCGRELEQYGQCVAAKPESWQRDCHYLKMSIAQCTSSHPIIRQIRQACAQPFEAFEECLR
QNEAAVGNCAEHMRRFLQCAEQVQPPRSPATVEAQPLPAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH