NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS1678.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1678.1 Public Homo sapiens 2 C2orf50 24 110 108 CCDS HistoryNCBI Gene:130813Re-query CCDS DB by CCDS ID:1678.1Re-query CCDS DB by GeneID:130813See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1678.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000381585.8 ENSP00000370997.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000381585.8Link to Ensembl Protein Viewer:ENSP00000370997.3Re-query CCDS DB by Nucleotide ID:ENST00000381585Re-query CCDS DB by Protein ID:ENSP00000370997
Original member Current member EBI ENST00000405022.3 ENSP00000384186.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000405022.3Link to Ensembl Protein Viewer:ENSP00000384186.3Re-query CCDS DB by Nucleotide ID:ENST00000405022Re-query CCDS DB by Protein ID:ENSP00000384186
Original member Current member NCBI NM_001371320.1 NP_001358249.1 Accepted alive Link to Nucleotide Sequence:NM_001371320.1Link to Protein Sequence:NP_001358249.1Re-query CCDS DB by Nucleotide ID:NM_001371320Re-query CCDS DB by Protein ID:NP_001358249Link to BLAST:NP_001358249.1
Original member Current member NCBI NM_001371321.1 NP_001358250.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001371321.1Link to Protein Sequence:NP_001358250.1Re-query CCDS DB by Nucleotide ID:NM_001371321Re-query CCDS DB by Protein ID:NP_001358250Link to BLAST:NP_001358250.1
Original member Current member NCBI NM_182500.4 NP_872306.1 Accepted alive Link to Nucleotide Sequence:NM_182500.4Link to Protein Sequence:NP_872306.1Re-query CCDS DB by Nucleotide ID:NM_182500Re-query CCDS DB by Protein ID:NP_872306Link to BLAST:NP_872306.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001358249.1 162 Q96LR7 162 100% 0 0
NP_001358250.1 162 Q96LR7 162 100% 0 0
NP_872306.1 162 Q96LR7 162 100% 0 0

Chromosomal Locations for CCDS 1678.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 11133335 11133591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 11140510 11140549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 11143920 11144111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (489 nt):
ATGGGGAGCCACCCCACCCCTGGGCTCCAGAGAACCACATCAGCTGGGTACCGATTGCCCCCCACCAGGC
CACCAGCCTCGGTCTCCCCAGCTGCCCGGGGTGGCCCTATGGCCAGCAGGGGTCTTGCTGGTGGCTGCCA
GGCCCCCCAGGCTCTGAAGGCGCAGCGGGTGGCTCAGGGAGCTGCCTGCGATGGCGTGCAGCAGGACCAG
CTGTGGCGGGAGCTCCTGGAGGCCGAGCGGCGGGGCCAGCAGCGCTGGATTCAGAACTGGAGTTTCCTGA
AAGACTATGACCCAATGGGCAACAAGAAGGAGCCTGAGAAGTTGCCAGACCATGTGCCTCTCTTTTCGGA
CACAGTTCCCAGTTCCACGAACCAGGTTGTGGGCAGCAGGCTGGACACACCCCTGGGACAGACTCTCATC
CGCATGGACTTCTTCTTCACAGAAGGGGCCCGGAAGAAGAAGCTGGAGGACCAGATGCAGCCCATCTAG

Translation (162 aa):
MGSHPTPGLQRTTSAGYRLPPTRPPASVSPAARGGPMASRGLAGGCQAPQALKAQRVAQGAACDGVQQDQ
LWRELLEAERRGQQRWIQNWSFLKDYDPMGNKKEPEKLPDHVPLFSDTVPSSTNQVVGSRLDTPLGQTLI
RMDFFFTEGARKKKLEDQMQPI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH