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Report for CCDS1621.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1621.2 Public Homo sapiens 1 PLD5 24 110 108 CCDS HistoryNCBI Gene:200150Re-query CCDS DB by CCDS ID:1621.2Re-query CCDS DB by GeneID:200150See the combined annotation on chromosome 1 in Sequence Viewer

Public Note for CCDS 1621.1
The coding region has been updated to represent an alternate splice pattern that is more supported by the available transcript and protein data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 1621.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000442594.6 ENSP00000414188.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000442594.6Link to Ensembl Protein Viewer:ENSP00000414188.3Re-query CCDS DB by Nucleotide ID:ENST00000442594Re-query CCDS DB by Protein ID:ENSP00000414188
Original member Current member EBI ENST00000536534.7 ENSP00000440896.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000536534.7Link to Ensembl Protein Viewer:ENSP00000440896.1Re-query CCDS DB by Nucleotide ID:ENST00000536534Re-query CCDS DB by Protein ID:ENSP00000440896
Original member Current member NCBI NM_001372062.1 NP_001358991.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001372062.1Link to Protein Sequence:NP_001358991.1Re-query CCDS DB by Nucleotide ID:NM_001372062Re-query CCDS DB by Protein ID:NP_001358991Link to BLAST:NP_001358991.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001358991.1 536 Q8N7P1-1 536 100% 0 0

Chromosomal Locations for CCDS 1621.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 242089854 242090110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 242100668 242100782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 242107671 242107839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 242113890 242114026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 242124468 242124665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 242219988 242220115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 242265337 242265448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 242288362 242288530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 242348106 242348242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 242524088 242524276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1611 nt):
ATGGAGATCCGGCAGCACGAGTGGCTCTCGGCCTCCCCCCATGAGGGCTTCGAGCAGATGAGGCTCAAAA
GCCGCCCCAAGGAGCCCTCCCCAAGCCTGACCCGAGTGGGCGCGAACTTCTACAGCAGCGTCAAGCAGCA
GGACTACAGCGCCAGCGTCTGGCTTCGGAGGAAAGACAAGCTGGAGCACTCCCAGCAGAAGTGCATCGTG
ATCTTTGCCCTGGTGTGCTGCTTTGCCATTCTGGTTGCACTGATCTTTTCAGCCGTGGACATCATGGGAG
AGGATGAGGATGGACTCTCAGAAAAAAATTGCCAAAATAAATGTCGAATTGCCCTGGTGGAAAATATTCC
TGAAGGCCTTAACTATTCAGAAAATGCACCATTTCACTTATCACTTTTCCAAGGCTGGATGAATTTACTC
AACATGGCCAAAAAGTCTGTTGACATAGTGTCTTCCCATTGGGATCTCAACCACACTCATCCATCAGCAT
GTCAGGGTCAACGTCTTTTTGAAAAGTTGCTCCAGCTGACTTCGCAAAATATTGAAATCAAGCTAGTGAG
TGATGTAACAGCTGATTCAAAGGTATTAGAAGCCTTGAAATTAAAGGGAGCCGAGGTGACGTACATGAAC
ATGACCGCTTACAACAAGGGCCGGCTGCAGTCCTCCTTCTGGATCGTGGACAAACAGCACGTGTATATCG
GCAGTGCCGGTTTGGACTGGCAATCCCTGGGACAGATGAAAGAACTCGGTGTCATCTTCTACAACTGCAG
CTGCCTGGTCCTAGATTTACAAAGGATATTTGCTCTATATAGTTCATTAAAATTCAAAAGCAGAGTGCCT
CAAACCTGGTCCAAAAGACTCTATGGAGTCTATGACAATGAAAAGAAATTGCAACTTCAGTTGAATGAAA
CCAAATCTCAAGCATTTGTATCGAATTCTCCAAAACTCTTTTGCCCTAAAAACAGAAGTTTTGACATAGA
TGCCATCTACAGTGTGATAGATGATGCCAAGCAGTATGTGTACATCGCTGTCATGGACTACCTGCCTATC
TCCAGCACAAGCACCAAAAGGACTTACTGGCCAGACTTGGATGCAAAAATAAGAGAAGCATTAGTTTTAC
GAAGCGTTAGAGTTCGACTCCTTTTAAGCTTCTGGAAGGAAACTGATCCCCTTACGTTTAACTTTATTTC
ATCTCTTAAAGCGATTTGCACTGAAATAGCCAACTGCAGTTTGAAAGTTAAATTTTTTGATCTGGAAAGA
GAGAATGCTTGTGCTACAAAAGAACAAAAGAATCACACCTTTCCTAGGTTAAATCGCAACAAGTACATGG
TGACAGATGGAGCAGCTTATATTGGAAATTTTGATTGGGTAGGGAATGATTTCACTCAGAATGCTGGCAC
GGGCCTTGTTATCAACCAGGCAGATGTGAGGAACAACAGAAGCATCATTAAGCAACTTAAAGATGTGTTT
GAAAGGGACTGGTATTCACCGTATGCCAAAACCTTACAGCCAACCAAACAGCCGAACTGCTCAAGCCTGT
TCAAACTCAAACCCCTCTCCAACAAAACTGCCACAGACGACACAGGCGGAAAGGATCCCCGGAACGTATA
A

Translation (536 aa):
MEIRQHEWLSASPHEGFEQMRLKSRPKEPSPSLTRVGANFYSSVKQQDYSASVWLRRKDKLEHSQQKCIV
IFALVCCFAILVALIFSAVDIMGEDEDGLSEKNCQNKCRIALVENIPEGLNYSENAPFHLSLFQGWMNLL
NMAKKSVDIVSSHWDLNHTHPSACQGQRLFEKLLQLTSQNIEIKLVSDVTADSKVLEALKLKGAEVTYMN
MTAYNKGRLQSSFWIVDKQHVYIGSAGLDWQSLGQMKELGVIFYNCSCLVLDLQRIFALYSSLKFKSRVP
QTWSKRLYGVYDNEKKLQLQLNETKSQAFVSNSPKLFCPKNRSFDIDAIYSVIDDAKQYVYIAVMDYLPI
SSTSTKRTYWPDLDAKIREALVLRSVRVRLLLSFWKETDPLTFNFISSLKAICTEIANCSLKVKFFDLER
ENACATKEQKNHTFPRLNRNKYMVTDGAAYIGNFDWVGNDFTQNAGTGLVINQADVRNNRSIIKQLKDVF
ERDWYSPYAKTLQPTKQPNCSSLFKLKPLSNKTATDDTGGKDPRNV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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