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Report for CCDS14610.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14610.1 Public Homo sapiens X DCAF12L1 24 110 108 CCDS HistoryNCBI Gene:139170Re-query CCDS DB by CCDS ID:14610.1Re-query CCDS DB by GeneID:139170See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14610.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000371126.3 ENSP00000360167.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000371126.3Link to Ensembl Protein Viewer:ENSP00000360167.1Re-query CCDS DB by Nucleotide ID:ENST00000371126Re-query CCDS DB by Protein ID:ENSP00000360167
Original member Current member NCBI NM_178470.5 NP_848565.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_178470.5Link to Protein Sequence:NP_848565.2Re-query CCDS DB by Nucleotide ID:NM_178470Re-query CCDS DB by Protein ID:NP_848565Link to BLAST:NP_848565.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848565.2 463 Q5VU92 463 100% 0 0

Chromosomal Locations for CCDS 14610.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 126551217 126552608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1392 nt):
ATGGCCCAGCAGCAAACAGGTAGCAGGAAACGGAAAGCGCCCGCGGTCGAGGCGGACGCCGAGAGCTCGC
CG
TCGCAGGGCTTGGCGGCAGCGGACGGTGAGGGGCCGCTGCTACTCAAGAGGCAGAGGCGGCCGGCGAC
G
TATCGCTCGATGGCGCACTATCTGAAGGTTCGGGAGGTAGGCGGGTGGGGCCCCGCCAGGCTCCAGGGC
TTC
GATGGCGAGCTGCGGGGCTACGCGGTACAGAGGCTGCCCGAGCTGCTGACGGAGCGCCAACTGGAGC
TG
GGCACGGTCAACAAGGTGTTCGCGTCACAGTGGCTGAACTCCAGGCAGGTGGTGTGCGGCACCAAGTG
T
AACACGCTTTTCGTGGTGGACGTGGAGTCAGGCCACATCGCGCGCATTCCCCTCTTGCGGGACAGTGAG
GCC
AGGCTGGCCCAGGACCAACAGGGCTGCGGCATCCATGCCATCGAGCTGAATCCCTCCAAGACGCTTC
TG
GCCACCGGCGGCGAAAACCCCAACAGCCTGGCCATCTACCAGCTGCCCTCCCTGGATCCCCTGTGCCT
G
GGCGACCGCCATGGCCACAAGGACTGGATCTTCGCCGTCGCCTGGCTGAGTGACACCGTAGCCGTGAGC
GGC
TCCCGCGACGGCACTGTGGCGCTGTGGCGGATGGACCCGGACAAGTTCGATGACACTGTTGCCTGGC
AT
AGCGAGGTGGGTCTCCCCGTATATGCCCACATCCGTCCGAGGGATGTGGAGGCCATCCCCAGGGCCAT
C
ATCAACCCCAGTAACCGCAAGGTGCGGGCCCTGGCCTGCGGCGGCAAGAACCAGGAACTGGGAGCGGTG
TCC
TTGGACGGCTACTTCCACCTGTGGAAAGCCGGGAGCGCACTATCCAGGCTGCTGTCCATCAGGCTGC
CC
TACTTCCGGGATAATGTGTGCCTGACCTACTGTGATGATATGTCTGTGTACGCCGTGGGCTCCCATTC
C
CACGTCTCTTTCCTGGATCTGCGCCAGGACCAGCAGAACATCCGGCCCCTGTGTTCTCGAGAGGGTGGC
ACA
GGCGTGCGGTCGCTGAGCTTCTACCGCCACATCATCACTGTGGGCACCGGTCAGGGCTCCCTGCTCT
TC
TATGACGTCCGGGCCCAGAAATTCCTGGAGGAAAGAGCCTCCGCCACCCTGGAGTCCTCTTCGGGACC
T
GCAAGGAGGAAGCTCAGGCTTGCCTGTGGCAGAGGCTGGCTCAACCACAATGATTTCTGGGTGAATTAC
TTT
GGTGGCATGGAAGTGTTTCCCAATGCGCTCTACACCCACTGCTACAACTGGCCTGAGATGAAGCTCT
TT
GTGGCTGGGGGGCCTCTCCCTGCAGGCCTCCATGGGAACTATGCAGGCCTCTGGAGCTAA


Translation (463 aa):
MAQQQTGSRKRKAPAVEADAESSPSQGLAAADGEGPLLLKRQRRPATYRSMAHYLKVREVGGWGPARLQG
F
DGELRGYAVQRLPELLTERQLELGTVNKVFASQWLNSRQVVCGTKCNTLFVVDVESGHIARIPLLRDSE
A
RLAQDQQGCGIHAIELNPSKTLLATGGENPNSLAIYQLPSLDPLCLGDRHGHKDWIFAVAWLSDTVAVS
G
SRDGTVALWRMDPDKFDDTVAWHSEVGLPVYAHIRPRDVEAIPRAIINPSNRKVRALACGGKNQELGAV
S
LDGYFHLWKAGSALSRLLSIRLPYFRDNVCLTYCDDMSVYAVGSHSHVSFLDLRQDQQNIRPLCSREGG
T
GVRSLSFYRHIITVGTGQGSLLFYDVRAQKFLEERASATLESSSGPARRKLRLACGRGWLNHNDFWVNY
F
GGMEVFPNALYTHCYNWPEMKLFVAGGPLPAGLHGNYAGLWS




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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