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Report for CCDS13744.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13744.1 Public Homo sapiens 22 SLC25A18 24 110 108 CCDS HistoryNCBI Gene:83733Re-query CCDS DB by CCDS ID:13744.1Re-query CCDS DB by GeneID:83733See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13744.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000327451.11 ENSP00000329033.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000327451.11Link to Ensembl Protein Viewer:ENSP00000329033.5Re-query CCDS DB by Nucleotide ID:ENST00000327451Re-query CCDS DB by Protein ID:ENSP00000329033
Original member Current member EBI ENST00000399813.1 ENSP00000382710.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000399813.1Link to Ensembl Protein Viewer:ENSP00000382710.1Re-query CCDS DB by Nucleotide ID:ENST00000399813Re-query CCDS DB by Protein ID:ENSP00000382710
Original member Current member NCBI NM_001303484.2 NP_001290413.1 Accepted alive Link to Nucleotide Sequence:NM_001303484.2Link to Protein Sequence:NP_001290413.1Re-query CCDS DB by Nucleotide ID:NM_001303484Re-query CCDS DB by Protein ID:NP_001290413Link to BLAST:NP_001290413.1
Original member Current member NCBI NM_031481.3 NP_113669.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_031481.3Link to Protein Sequence:NP_113669.1Re-query CCDS DB by Nucleotide ID:NM_031481Re-query CCDS DB by Protein ID:NP_113669Link to BLAST:NP_113669.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001290413.1 315 Q9H1K4 315 100% 0 0
NP_113669.1 315 Q9H1K4 315 100% 0 0

Chromosomal Locations for CCDS 13744.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 17579945 17579964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 17581037 17581159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 17581358 17581413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 17582563 17582653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 17583416 17583534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 17587136 17587301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 17587925 17588079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 17589590 17589665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 17590095 17590236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (948 nt):
ATGACCCACCAGGATCTGAGCATCACAGCCAAACTCATCAATGGAGGTGTAGCAGGGCTCGTGGGGGTGA
CCTGCGTGTTCCCCATCGACTTGGCCAAGACTCGCCTGCAGAACCAGCATGGGAAAGCCATGTACAAAGG
AATGATCGACTGCCTGATGAAGACGGCTCGGGCGGAGGGCTTCTTCGGCATGTACCGAGGGGCTGCAGTG
AACCTCACTCTGGTCACTCCAGAGAAGGCCATCAAGCTGGCGGCCAACGACTTTTTCCGGCGGCTGCTCA
TGGAAGATGGGATGCAGCGGAACCTGAAGATGGAGATGCTTGCCGGGTGTGGGGCTGGGATGTGCCAGGT
CGTGGTGACCTGTCCCATGGAAATGCTCAAGATTCAGCTGCAGGATGCTGGACGCCTGGCCGTCCATCAT
CAGGGCTCGGCCTCAGCACCCTCCACCTCCAGGTCCTACACAACTGGTTCGGCTTCCACCCACAGGCGCC
CCTCTGCCACCCTCATTGCCTGGGAGCTGCTCCGCACTCAGGGCCTGGCTGGGCTCTACAGGGGCCTGGG
TGCCACTCTCCTCAGAGACATTCCTTTCTCCATCATCTACTTCCCACTGTTTGCCAACCTTAACAACCTG
GGGTTCAACGAGCTCGCCGGTAAGGCGTCCTTTGCACATTCCTTCGTGTCAGGCTGTGTGGCAGGTTCCA
TAGCTGCGGTCGCAGTGACGCCTCTAGATGTTCTGAAAACTCGAATCCAAACCCTCAAGAAAGGCCTGGG
CGAGGACATGTACAGTGGGATCACCGACTGTGCCAGGAAACTCTGGATTCAGGAGGGACCATCTGCCTTC
ATGAAAGGCGCTGGCTGCCGGGCACTGGTCATAGCACCTCTCTTTGGGATTGCTCAAGGGGTCTATTTTA
TTGGGATTGGAGAGCGCATCTTAAAGTGTTTTGACTAG

Translation (315 aa):
MTHQDLSITAKLINGGVAGLVGVTCVFPIDLAKTRLQNQHGKAMYKGMIDCLMKTARAEGFFGMYRGAAV
NLTLVTPEKAIKLAANDFFRRLLMEDGMQRNLKMEMLAGCGAGMCQVVVTCPMEMLKIQLQDAGRLAVHH
QGSASAPSTSRSYTTGSASTHRRPSATLIAWELLRTQGLAGLYRGLGATLLRDIPFSIIYFPLFANLNNL
GFNELAGKASFAHSFVSGCVAGSIAAVAVTPLDVLKTRIQTLKKGLGEDMYSGITDCARKLWIQEGPSAF
MKGAGCRALVIAPLFGIAQGVYFIGIGERILKCFD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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