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Report for CCDS13303.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13303.2 Public Homo sapiens 20 BPI 24 110 108 CCDS HistoryNCBI Gene:671Re-query CCDS DB by CCDS ID:13303.2Re-query CCDS DB by GeneID:671See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 13303.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000642449.2 ENSP00000494528.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000642449.2Link to Ensembl Protein Viewer:ENSP00000494528.2Re-query CCDS DB by Nucleotide ID:ENST00000642449Re-query CCDS DB by Protein ID:ENSP00000494528
Original member Current member NCBI NM_001725.3 NP_001716.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001725.3Link to Protein Sequence:NP_001716.3Re-query CCDS DB by Nucleotide ID:NM_001725Re-query CCDS DB by Protein ID:NP_001716Link to BLAST:NP_001716.3

Chromosomal Locations for CCDS 13303.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 38304224 38304353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 38307567 38307681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 38308930 38309058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 38310491 38310652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 38311874 38311937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 38318413 38318476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 38320183 38320274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 38323870 38324046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 38324774 38324833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 38326265 38326432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 38327588 38327655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 38331048 38331090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 38334430 38334493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 38335598 38335674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 38337146 38337184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1452 nt):
ATGGCCAGGGGCCCTTGCAACGCGCCGAGATGGGCGTCCCTGATGGTGCTGGTCGCCATAGGCACCGCCG
TGACAGCGGCCGTCAACCCTGGCGTCGTGGTCAGGATCTCCCAGAAGGGCCTGGACTACGCCAGCCAGCA
GGGGACGGCCGCTCTGCAGAAGGAGCTGAAGAGGATCAAGATTCCTGACTACTCAGACAGCTTTAAGATC
AAGCATCTTGGGAAGGGGCATTATAGCTTCTACAGCATGGACATCCGTGAATTCCAGCTTCCCAGTTCCC
AGATAAGCATGGTGCCCAATGTGGGCCTTAAGTTCTCCATCAGCAACGCCAATATCAAGATCAGCGGGAA
ATGGAAGGCACAAAAGAGATTCTTAAAAATGAGCGGCAATTTTGACCTGAGCATAGAAGGCATGTCCATT
TCGGCTGATCTGAAGCTGGGCAGTAACCCCACGTCAGGCAAGCCCACCATCACCTGCTCCAGCTGCAGCA
GCCACATCAACAGTGTCCACGTGCACATCTCAAAGAGCAAAGTGGGGTGGCTGATCCAACTCTTCCACAA
AAAAATTGAGTCTGCGCTTCGAAACAAGATGAACAGCCAGGTCTGCGAGAAAGTGACCAATTCTGTATCC
TCCGAGCTGCAACCTTATTTCCAGACTCTGCCAGTAATGACCAAAATAGATTCTGTGGCTGGAATCAACT
ATGGTCTGGTGGCACCTCCAGCAACCACGGCTGAGACCCTGGATGTACAGATGAAGGGGGAGTTTTACAG
TGAGAACCACCACAATCCACCTCCCTTTGCTCCACCAGTGATGGAGTTTCCCGCTGCCCATGACCGCATG
GTATACCTGGGCCTCTCAGACTACTTCTTCAACACAGCCGGGCTTGTATACCAAGAGGCTGGGGTCTTGA
AGATGACCCTTAGAGATGACATGATTCCAAAGGAGTCCAAATTTCGACTGACAACCAAGTTCTTTGGAAC
CTTCCTACCTGAGGTGGCCAAGAAGTTTCCCAACATGAAGATACAGATCCATGTCTCAGCCTCCACCCCG
CCACACCTGTCTGTGCAGCCCACCGGCCTTACCTTCTACCCTGCCGTGGATGTCCAGGCCTTTGCCGTCC
TCCCCAACTCCTCCCTGGCTTCCCTCTTCCTGATTGGCATGCACACAACTGGTTCCATGGAGGTCAGCGC
CGAGTCCAACAGGCTTGTTGGAGAGCTCAAGCTGGATAGGCTGCTCCTGGAACTGAAGCACTCAAATATT
GGCCCCTTCCCGGTTGAATTGCTGCAGGATATCATGAACTACATTGTACCCATTCTTGTGCTGCCCAGGG
TTAACGAGAAACTACAGAAAGGCTTCCCTCTCCCGACGCCGGCCAGAGTCCAGCTCTACAACGTAGTGCT
TCAGCCTCACCAGAACTTCCTGCTGTTCGGTGCAGACGTTGTCTATAAATGA

Translation (483 aa):
MARGPCNAPRWASLMVLVAIGTAVTAAVNPGVVVRISQKGLDYASQQGTAALQKELKRIKIPDYSDSFKI
KHLGKGHYSFYSMDIREFQLPSSQISMVPNVGLKFSISNANIKISGKWKAQKRFLKMSGNFDLSIEGMSI
SADLKLGSNPTSGKPTITCSSCSSHINSVHVHISKSKVGWLIQLFHKKIESALRNKMNSQVCEKVTNSVS
SELQPYFQTLPVMTKIDSVAGINYGLVAPPATTAETLDVQMKGEFYSENHHNPPPFAPPVMEFPAAHDRM
VYLGLSDYFFNTAGLVYQEAGVLKMTLRDDMIPKESKFRLTTKFFGTFLPEVAKKFPNMKIQIHVSASTP
PHLSVQPTGLTFYPAVDVQAFAVLPNSSLASLFLIGMHTTGSMEVSAESNRLVGELKLDRLLLELKHSNI
GPFPVELLQDIMNYIVPILVLPRVNEKLQKGFPLPTPARVQLYNVVLQPHQNFLLFGADVVYK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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