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Report for CCDS13121.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13121.1 Public Homo sapiens 20 FLRT3 24 110 108 CCDS HistoryNCBI Gene:23767Re-query CCDS DB by CCDS ID:13121.1Re-query CCDS DB by GeneID:23767See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13121.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000341420.5 ENSP00000339912.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000341420.5Link to Ensembl Protein Viewer:ENSP00000339912.4Re-query CCDS DB by Nucleotide ID:ENST00000341420Re-query CCDS DB by Protein ID:ENSP00000339912
Original member Current member EBI ENST00000378053.3 ENSP00000367292.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000378053.3Link to Ensembl Protein Viewer:ENSP00000367292.3Re-query CCDS DB by Nucleotide ID:ENST00000378053Re-query CCDS DB by Protein ID:ENSP00000367292
Original member Current member NCBI NM_013281.4 NP_037413.1 Accepted alive Link to Nucleotide Sequence:NM_013281.4Link to Protein Sequence:NP_037413.1Re-query CCDS DB by Nucleotide ID:NM_013281Re-query CCDS DB by Protein ID:NP_037413Link to BLAST:NP_037413.1
Original member Current member NCBI NM_198391.3 NP_938205.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_198391.3Link to Protein Sequence:NP_938205.1Re-query CCDS DB by Nucleotide ID:NM_198391Re-query CCDS DB by Protein ID:NP_938205Link to BLAST:NP_938205.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_037413.1 649 Q9NZU0 649 100% 0 0
NP_938205.1 649 Q9NZU0 649 100% 0 0

Chromosomal Locations for CCDS 13121.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 14325557 14327506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1950 nt):
ATGATCAGCGCAGCCTGGAGCATCTTCCTCATCGGGACTAAAATTGGGCTGTTCCTTCAAGTAGCACCTC
TATCAGTTATGGCTAAATCCTGTCCATCTGTGTGTCGCTGCGATGCGGGTTTCATTTACTGTAATGATCG
CTTTCTGACATCCATTCCAACAGGAATACCAGAGGATGCTACAACTCTCTACCTTCAGAACAACCAAATA
AATAATGCTGGGATTCCTTCAGATTTGAAAAACTTGCTGAAAGTAGAAAGAATATACCTATACCACAACA
GTTTAGATGAATTTCCTACCAACCTCCCAAAGTATGTAAAAGAGTTACATTTGCAAGAAAATAACATAAG
GACTATCACTTATGATTCACTTTCAAAAATTCCCTATCTGGAAGAATTACATTTAGATGACAACTCTGTC
TCTGCAGTTAGCATAGAAGAGGGAGCATTCCGAGACAGCAACTATCTCCGACTGCTTTTCCTGTCCCGTA
ATCACCTTAGCACAATTCCCTGGGGTTTGCCCAGGACTATAGAAGAACTACGCTTGGATGATAATCGCAT
ATCCACTATTTCATCACCATCTCTTCAAGGTCTCACTAGTCTAAAACGCCTGGTTCTAGATGGAAACCTG
TTGAACAATCATGGTTTAGGTGACAAAGTTTTCTTCAACCTAGTTAATTTGACAGAGCTGTCCCTGGTGC
GGAATTCCCTGACTGCTGCACCAGTAAACCTTCCAGGCACAAACCTGAGGAAGCTTTATCTTCAAGATAA
CCACATCAATCGGGTGCCCCCAAATGCTTTTTCTTATCTAAGGCAGCTCTATCGACTGGATATGTCCAAT
AATAACCTAAGTAATTTACCTCAGGGTATCTTTGATGATTTGGACAATATAACACAACTGATTCTTCGCA
ACAATCCCTGGTATTGCGGGTGCAAGATGAAATGGGTACGTGACTGGTTACAATCACTACCTGTGAAGGT
CAACGTGCGTGGGCTCATGTGCCAAGCCCCAGAAAAGGTTCGTGGGATGGCTATTAAGGATCTCAATGCA
GAACTGTTTGATTGTAAGGACAGTGGGATTGTAAGCACCATTCAGATAACCACTGCAATACCCAACACAG
TGTATCCTGCCCAAGGACAGTGGCCAGCTCCAGTGACCAAACAGCCAGATATTAAGAACCCCAAGCTCAC
TAAGGATCACCAAACCACAGGGAGTCCCTCAAGAAAAACAATTACAATTACTGTGAAGTCTGTCACCTCT
GATACCATTCATATCTCTTGGAAACTTGCTCTACCTATGACTGCTTTGAGACTCAGCTGGCTTAAACTGG
GCCATAGCCCGGCATTTGGATCTATAACAGAAACAATTGTAACAGGGGAACGCAGTGAGTACTTGGTCAC
AGCCCTGGAGCCTGATTCACCCTATAAAGTATGCATGGTTCCCATGGAAACCAGCAACCTCTACCTATTT
GATGAAACTCCTGTTTGTATTGAGACTGAAACTGCACCCCTTCGAATGTACAACCCTACAACCACCCTCA
ATCGAGAGCAAGAGAAAGAACCTTACAAAAACCCCAATTTACCTTTGGCTGCCATCATTGGTGGGGCTGT
GGCCCTGGTTACCATTGCCCTTCTTGCTTTAGTGTGTTGGTATGTTCATAGGAATGGATCGCTCTTCTCA
AGGAACTGTGCATATAGCAAAGGGAGGAGAAGAAAGGATGACTATGCAGAAGCTGGCACTAAGAAGGACA
ACTCTATCCTGGAAATCAGGGAAACTTCTTTTCAGATGTTACCAATAAGCAATGAACCCATCTCGAAGGA
GGAGTTTGTAATACACACCATATTTCCTCCTAATGGAATGAATCTGTACAAAAACAATCACAGTGAAAGC
AGTAGTAACCGAAGCTACAGAGACAGTGGTATTCCAGACTCAGATCACTCACACTCATGA

Translation (649 aa):
MISAAWSIFLIGTKIGLFLQVAPLSVMAKSCPSVCRCDAGFIYCNDRFLTSIPTGIPEDATTLYLQNNQI
NNAGIPSDLKNLLKVERIYLYHNSLDEFPTNLPKYVKELHLQENNIRTITYDSLSKIPYLEELHLDDNSV
SAVSIEEGAFRDSNYLRLLFLSRNHLSTIPWGLPRTIEELRLDDNRISTISSPSLQGLTSLKRLVLDGNL
LNNHGLGDKVFFNLVNLTELSLVRNSLTAAPVNLPGTNLRKLYLQDNHINRVPPNAFSYLRQLYRLDMSN
NNLSNLPQGIFDDLDNITQLILRNNPWYCGCKMKWVRDWLQSLPVKVNVRGLMCQAPEKVRGMAIKDLNA
ELFDCKDSGIVSTIQITTAIPNTVYPAQGQWPAPVTKQPDIKNPKLTKDHQTTGSPSRKTITITVKSVTS
DTIHISWKLALPMTALRLSWLKLGHSPAFGSITETIVTGERSEYLVTALEPDSPYKVCMVPMETSNLYLF
DETPVCIETETAPLRMYNPTTTLNREQEKEPYKNPNLPLAAIIGGAVALVTIALLALVCWYVHRNGSLFS
RNCAYSKGRRRKDDYAEAGTKKDNSILEIRETSFQMLPISNEPISKEEFVIHTIFPPNGMNLYKNNHSES
SSNRSYRDSGIPDSDHSHS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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