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Report for CCDS1268.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1268.1 Public Homo sapiens 1 GPR161 24 110 108 CCDS HistoryNCBI Gene:23432Re-query CCDS DB by CCDS ID:1268.1Re-query CCDS DB by GeneID:23432See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1268.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000367835.1 ENSP00000356809.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000367835.1Link to Ensembl Protein Viewer:ENSP00000356809.1Re-query CCDS DB by Nucleotide ID:ENST00000367835Re-query CCDS DB by Protein ID:ENSP00000356809
Original member Current member EBI ENST00000367838.5 ENSP00000356812.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000367838.5Link to Ensembl Protein Viewer:ENSP00000356812.1Re-query CCDS DB by Nucleotide ID:ENST00000367838Re-query CCDS DB by Protein ID:ENSP00000356812
Original member Current member EBI ENST00000682931.1 ENSP00000506967.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000682931.1Link to Ensembl Protein Viewer:ENSP00000506967.1Re-query CCDS DB by Nucleotide ID:ENST00000682931Re-query CCDS DB by Protein ID:ENSP00000506967
Original member Current member NCBI NM_001267610.2 NP_001254539.1 Accepted alive Link to Nucleotide Sequence:NM_001267610.2Link to Protein Sequence:NP_001254539.1Re-query CCDS DB by Nucleotide ID:NM_001267610Re-query CCDS DB by Protein ID:NP_001254539Link to BLAST:NP_001254539.1
Original member Current member NCBI NM_001349632.1 NP_001336561.1 Accepted alive Link to Nucleotide Sequence:NM_001349632.1Link to Protein Sequence:NP_001336561.1Re-query CCDS DB by Nucleotide ID:NM_001349632Re-query CCDS DB by Protein ID:NP_001336561Link to BLAST:NP_001336561.1
Original member Current member NCBI NM_001349633.1 NP_001336562.1 Accepted alive Link to Nucleotide Sequence:NM_001349633.1Link to Protein Sequence:NP_001336562.1Re-query CCDS DB by Nucleotide ID:NM_001349633Re-query CCDS DB by Protein ID:NP_001336562Link to BLAST:NP_001336562.1
Original member Current member NCBI NM_001349634.1 NP_001336563.1 Accepted alive Link to Nucleotide Sequence:NM_001349634.1Link to Protein Sequence:NP_001336563.1Re-query CCDS DB by Nucleotide ID:NM_001349634Re-query CCDS DB by Protein ID:NP_001336563Link to BLAST:NP_001336563.1
Original member Current member NCBI NM_001375883.1 NP_001362812.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001375883.1Link to Protein Sequence:NP_001362812.1Re-query CCDS DB by Nucleotide ID:NM_001375883Re-query CCDS DB by Protein ID:NP_001362812Link to BLAST:NP_001362812.1
Original member Current member NCBI NM_001375884.1 NP_001362813.1 Accepted alive Link to Nucleotide Sequence:NM_001375884.1Link to Protein Sequence:NP_001362813.1Re-query CCDS DB by Nucleotide ID:NM_001375884Re-query CCDS DB by Protein ID:NP_001362813Link to BLAST:NP_001362813.1
Original member Current member NCBI NM_001375885.1 NP_001362814.1 Accepted alive Link to Nucleotide Sequence:NM_001375885.1Link to Protein Sequence:NP_001362814.1Re-query CCDS DB by Nucleotide ID:NM_001375885Re-query CCDS DB by Protein ID:NP_001362814Link to BLAST:NP_001362814.1
Original member Current member NCBI NM_001381909.1 NP_001368838.1 Accepted alive Link to Nucleotide Sequence:NM_001381909.1Link to Protein Sequence:NP_001368838.1Re-query CCDS DB by Nucleotide ID:NM_001381909Re-query CCDS DB by Protein ID:NP_001368838Link to BLAST:NP_001368838.1
Original member Current member NCBI NM_153832.3 NP_722561.1 Accepted alive Link to Nucleotide Sequence:NM_153832.3Link to Protein Sequence:NP_722561.1Re-query CCDS DB by Nucleotide ID:NM_153832Re-query CCDS DB by Protein ID:NP_722561Link to BLAST:NP_722561.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001254539.1 529 Q8N6U8-1 529 100% 0 0
NP_001336561.1 529 Q8N6U8-1 529 100% 0 0
NP_001336562.1 529 Q8N6U8-1 529 100% 0 0
NP_001336563.1 529 Q8N6U8-1 529 100% 0 0
NP_001362812.1 529 Q8N6U8-1 529 100% 0 0
NP_001362813.1 529 Q8N6U8-1 529 100% 0 0
NP_001362814.1 529 Q8N6U8-1 529 100% 0 0
NP_001368838.1 529 Q8N6U8-1 529 100% 0 0
NP_722561.1 529 Q8N6U8-1 529 100% 0 0

Chromosomal Locations for CCDS 1268.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 168085531 168085796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 168087585 168087704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 168090564 168090668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 168096508 168097232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 168104477 168104850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1590 nt):
ATGAGCCTCAACTCCTCCCTCAGCTGCAGGAAGGAGCTGAGTAATCTCACTGAGGAGGAGGGTGGCGAAG
GGGGCGTCATCATCACCCAGTTCATCGCCATCATTGTCATCACCATTTTTGTCTGCCTGGGAAACCTGGT
CATCGTGGTCACCTTGTACAAGAAGTCCTACCTCCTCACCCTCAGCAACAAGTTCGTCTTCAGCCTGACT
CTGTCCAACTTCCTGCTGTCCGTGTTGGTGCTGCCTTTTGTGGTGACGAGCTCCATCCGCAGGGAATGGA
TCTTTGGTGTAGTGTGGTGCAACTTCTCTGCCCTCCTCTACCTGCTGATCAGCTCTGCCAGCATGCTAAC
CCTCGGGGTCATTGCCATCGACCGCTACTATGCTGTCCTGTACCCCATGGTGTACCCCATGAAGATCACA
GGGAACCGGGCTGTGATGGCACTTGTCTACATCTGGCTTCACTCGCTCATCGGCTGCCTGCCACCCCTGT
TTGGTTGGTCATCCGTGGAGTTTGACGAGTTCAAATGGATGTGTGTGGCTGCTTGGCACCGGGAGCCTGG
CTACACGGCCTTCTGGCAGATCTGGTGTGCCCTCTTCCCCTTTCTGGTCATGCTGGTGTGCTATGGCTTC
ATCTTCCGCGTGGCCAGGGTCAAGGCACGCAAGGTGCACTGTGGCACAGTCGTCATCGTGGAGGAGGATG
CTCAGAGGACCGGGAGGAAGAACTCCAGCACCTCCACCTCCTCTTCAGGCAGCAGGAGGAATGCCTTTCA
GGGTGTGGTCTACTCGGCCAACCAGTGCAAAGCCCTCATCACCATCCTGGTGGTCCTCGGTGCCTTCATG
GTCACCTGGGGCCCCTACATGGTTGTCATCGCCTCTGAGGCCCTCTGGGGGAAAAGCTCCGTCTCCCCGA
GCCTGGAGACTTGGGCCACATGGCTGTCCTTTGCCAGCGCTGTCTGCCACCCCCTGATCTATGGACTCTG
GAACAAGACAGTTCGCAAAGAACTACTGGGCATGTGCTTTGGGGACCGGTATTATCGGGAACCATTTGTG
CAACGACAGAGGACTTCCAGGCTCTTCAGCATTTCCAACAGGATCACAGACCTGGGCCTGTCCCCACACC
TCACTGCGCTCATGGCAGGTGGACAGCCCCTGGGGCACAGCAGCAGCACGGGGGACACTGGCTTCAGCTG
CTCCCAGGACTCAGGGACAGATATGATGCTGCTTGAGGACTACACGTCTGATGACAACCCTCCCTCTCAC
TGCACTTGCCCACCCAAGAGAAGGAGCTCGGTGACATTTGAGGATGAAGTGGAACAAATCAAAGAAGCTG
CCAAGAACTCGATTCTTCATGTGAAAGCTGAAGTACACAAGTCCTTGGACAGTTACGCAGCAAGCTTGGC
CAAAGCCATTGAGGCCGAAGCCAAAATCAACTTATTTGGGGAGGAGGCTTTGCCAGGGGTCTTGGTTACA
GCACGGACTGTCCCGGGGGGCGGCTTCGGGGGCCGCCGAGGCAGCAGAACTCTTGTGAGCCAGAGGCTGC
AGTTGCAGAGCATCGAAGAAGGAGATGTTTTAGCTGCCGAGCAGAGATGA

Translation (529 aa):
MSLNSSLSCRKELSNLTEEEGGEGGVIITQFIAIIVITIFVCLGNLVIVVTLYKKSYLLTLSNKFVFSLT
LSNFLLSVLVLPFVVTSSIRREWIFGVVWCNFSALLYLLISSASMLTLGVIAIDRYYAVLYPMVYPMKIT
GNRAVMALVYIWLHSLIGCLPPLFGWSSVEFDEFKWMCVAAWHREPGYTAFWQIWCALFPFLVMLVCYGF
IFRVARVKARKVHCGTVVIVEEDAQRTGRKNSSTSTSSSGSRRNAFQGVVYSANQCKALITILVVLGAFM
VTWGPYMVVIASEALWGKSSVSPSLETWATWLSFASAVCHPLIYGLWNKTVRKELLGMCFGDRYYREPFV
QRQRTSRLFSISNRITDLGLSPHLTALMAGGQPLGHSSSTGDTGFSCSQDSGTDMMLLEDYTSDDNPPSH
CTCPPKRRSSVTFEDEVEQIKEAAKNSILHVKAEVHKSLDSYAASLAKAIEAEAKINLFGEEALPGVLVT
ARTVPGGGFGGRRGSRTLVSQRLQLQSIEEGDVLAAEQR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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