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Report for CCDS12430.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12430.1 Public Homo sapiens 19 LRP3 24 110 108 CCDS HistoryNCBI Gene:4037Re-query CCDS DB by CCDS ID:12430.1Re-query CCDS DB by GeneID:4037See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12430.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000253193.9 ENSP00000253193.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000253193.9Link to Ensembl Protein Viewer:ENSP00000253193.6Re-query CCDS DB by Nucleotide ID:ENST00000253193Re-query CCDS DB by Protein ID:ENSP00000253193
Original member Current member NCBI NM_002333.4 NP_002324.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002333.4Link to Protein Sequence:NP_002324.2Re-query CCDS DB by Nucleotide ID:NM_002333Re-query CCDS DB by Protein ID:NP_002324Link to BLAST:NP_002324.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002324.2 770 O75074 770 100% 0 0

Chromosomal Locations for CCDS 12430.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 33194786 33194858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 33196730 33196777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 33202848 33202986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 33204638 33204852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 33205246 33206362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 33206601 33206733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 33206988 33207575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2313 nt):
ATGGAGAAGCGCGCGGCCGCGGGGCTGGAGGGCGCGCCGGGCGCCCGGGCGCAGCTGGCCGTCGTCTGTC
TGGTGAACATCTTTCTCACCGGGAGACTCAGCAGTGCGGTTCCTGCCTTAGCGGCCTGCAGTGGGAAGCT
GGAGCAGCACACGGAGCGGCGTGGGGTCATCTACAGCCCGGCCTGGCCCCTCAACTACCCGCCAGGCACC
AACTGCAGCTGGTACATCCAGGGCGACCGTGGTGACATGATTACCATCAGCTTCCGCAACTTTGACGTGG
AGGAGTCCCACCAGTGCTCCCTGGACTGGCTCCTGCTGGGCCCAGCAGCCCCACCCCGCCAGGAGGCCTT
CCGCCTCTGTGGCTCCGCCATCCCACCTGCCTTCATCTCTGCCCGCGACCATGTCTGGATTTTCTTCCAC
TCAGACGCCTCCAGCTCCGGCCAGGCCCAGGGCTTCCGTCTGTCTTACATCCGAGGGAAGCTGGGCCAGG
CATCCTGCCAGGCAGATGAGTTCCGCTGTGACAACGGCAAGTGCCTGCCCGGCCCGTGGCAGTGCAACAC
GGTGGACGAGTGTGGAGACGGCTCTGATGAGGGCAACTGCTCGGCGCCCGCCTCCGAGCCTCCAGGCAGC
CTGTGCCCCGGGGGGACCTTCCCATGCAGCGGGGCGCGCTCCACGCGCTGCCTGCCTGTGGAGCGGCGCT
GTGACGGCTTGCAGGACTGCGGCGACGGCTCGGATGAGGCGGGCTGCCCCGACCTGGCGTGCGGCCGGCG
GCTGGGCAGCTTCTACGGCTCCTTTGCCTCCCCAGACCTGTTCGGCGCCGCTCGCGGGCCCTCAGACCTT
CACTGCACGTGGCTGGTGGACACACAGGACTCCCGGCGGGTGCTGCTGCAGCTGGAACTGCGGCTGGGCT
ATGACGACTACGTGCAGGTATACGAGGGCCTGGGCGAGCGCGGGGACCGCCTGCTGCAGACGCTGTCCTA
CCGCAGCAACCACCGGCCCGTGAGCCTGGAGGCCGCCCAGGGCCGCCTCACTGTGGCCTACCACGCGCGC
GCCCGCAGCGCCGGCCACGGCTTCAATGCCACCTACCAGGTGAAGGGCTATTGCCTCCCCTGGGAGCAGC
CGTGCGGGAGCAGTAGTGACAGTGACGGGGGCAGCCTGGGCGACCAGGGCTGCTTCTCAGAGCCACAGCG
CTGTGATGGCTGGTGGCATTGTGCCAGCGGCCGAGACGAGCAGGGCTGCCCTGCCTGCCCGCCCGACCAG
TACCCCTGCGAGGGTGGCAGTGGTCTGTGCTACACGCCTGCCGACCGCTGCAACAACCAGAAAAGCTGTC
CCGACGGCGCCGACGAGAAGAACTGCTTCTCCTGCCAGCCCGGCACCTTCCACTGCGGTACCAACCTGTG
CATCTTCGAGACGTGGCGCTGTGACGGCCAGGAAGACTGCCAGGACGGCAGCGATGAGCATGGGTGCCTG
GCCGCCGTGCCCCGCAAGGTCATCACGGCGGCGCTCATTGGCAGCCTGGTGTGTGGCCTGCTGCTGGTCA
TCGCGCTGGGCTGCGCCTTCAAGCTCTACTCACTGCGCACGCAGGAATACAGGGCCTTCGAGACCCAGAT
GACGCGCCTGGAGGCTGAGTTCGTGCGGCGGGAGGCACCCCCATCCTATGGTCAGCTCATCGCCCAGGGC
CTCATTCCACCCGTGGAGGACTTTCCTGTCTACAGTGCGTCCCAGGCCTCTGTGCTGCAGAATCTTCGCA
CAGCCATGCGGAGACAGATGCGTCGGCACGCCTCCCGCCGGGGGCCCTCCCGCCGCCGCCTCGGCCGCCT
CTGGAACCGGCTCTTTCACCGGCCGCGGGCGCCCCGAGGCCAGATCCCACTGCTGACCGCAGCACGCCCC
TCACAGACCGTGCTGGGCGATGGCTTCCTCCAGCCTGCTCCAGGGGCTGCCCCCGACCCCCCAGCACCGC
TCATGGACACAGGCAGCACCAGGGCGGCCGGAGACAGGCCCCCCAGTGCCCCCGGCCGTGCACCGGAGGT
GGGACCTTCAGGGCCACCCTTGCCCTCGGGCCTGCGAGACCCAGAGTGCAGGCCCGTGGACAAGGACAGA
AAGGTCTGCAGGGAGCCACTGGTAGACGGCCCAGCTCCTGCAGATGCACCTCGGGAGCCCTGCTCAGCCC
AGGACCCGCACCCCCAGGTCTCCACTGCCAGCAGCACCCTGGGCCCCCACTCGCCAGAGCCACTGGGGGT
CTGCAGGAACCCCCCGCCCCCCTGCTCCCCAATGCTGGAGGCCAGCGATGATGAGGCCCTGTTGGTCTGT
TGA

Translation (770 aa):
MEKRAAAGLEGAPGARAQLAVVCLVNIFLTGRLSSAVPALAACSGKLEQHTERRGVIYSPAWPLNYPPGT
NCSWYIQGDRGDMITISFRNFDVEESHQCSLDWLLLGPAAPPRQEAFRLCGSAIPPAFISARDHVWIFFH
SDASSSGQAQGFRLSYIRGKLGQASCQADEFRCDNGKCLPGPWQCNTVDECGDGSDEGNCSAPASEPPGS
LCPGGTFPCSGARSTRCLPVERRCDGLQDCGDGSDEAGCPDLACGRRLGSFYGSFASPDLFGAARGPSDL
HCTWLVDTQDSRRVLLQLELRLGYDDYVQVYEGLGERGDRLLQTLSYRSNHRPVSLEAAQGRLTVAYHAR
ARSAGHGFNATYQVKGYCLPWEQPCGSSSDSDGGSLGDQGCFSEPQRCDGWWHCASGRDEQGCPACPPDQ
YPCEGGSGLCYTPADRCNNQKSCPDGADEKNCFSCQPGTFHCGTNLCIFETWRCDGQEDCQDGSDEHGCL
AAVPRKVITAALIGSLVCGLLLVIALGCAFKLYSLRTQEYRAFETQMTRLEAEFVRREAPPSYGQLIAQG
LIPPVEDFPVYSASQASVLQNLRTAMRRQMRRHASRRGPSRRRLGRLWNRLFHRPRAPRGQIPLLTAARP
SQTVLGDGFLQPAPGAAPDPPAPLMDTGSTRAAGDRPPSAPGRAPEVGPSGPPLPSGLRDPECRPVDKDR
KVCREPLVDGPAPADAPREPCSAQDPHPQVSTASSTLGPHSPEPLGVCRNPPPPCSPMLEASDDEALLVC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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