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Report for CCDS12279.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12279.1 Public Homo sapiens 19 TRIR 24 110 108 CCDS HistoryNCBI Gene:79002Re-query CCDS DB by CCDS ID:12279.1Re-query CCDS DB by GeneID:79002See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12279.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000242784.5 ENSP00000242784.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000242784.5Link to Ensembl Protein Viewer:ENSP00000242784.3Re-query CCDS DB by Nucleotide ID:ENST00000242784Re-query CCDS DB by Protein ID:ENSP00000242784
Original member Current member NCBI NM_024038.4 NP_076943.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024038.4Link to Protein Sequence:NP_076943.1Re-query CCDS DB by Nucleotide ID:NM_024038Re-query CCDS DB by Protein ID:NP_076943Link to BLAST:NP_076943.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_076943.1 176 Q9BQ61 176 100% 0 0

Chromosomal Locations for CCDS 12279.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 12730961 12731068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12731344 12731421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12734313 12734657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (531 nt):
ATGGCTGCCCGAGGGAGACGGGCGGAGCCTCAGGGCCGGGAGGCTCCGGGCCCCGCGGGCGGTGGCGGTG
GCGGGAGCCGTTGGGCTGAGTCGGGATCGGGGACGTCGCCCGAGAGCGGGGACGAGGAGGTGTCGGGCGC
GGGTTCGAGCCCGGTGTCGGGCGGCGTGAACTTGTTCGCCAACGACGGCAGCTTCCTGGAGCTGTTCAAG
CGGAAGATGGAGGAGGAGCAGCGGCAGCGGCAGGAGGAGCCGCCCCCGGGTCCGCAGCGACCCGACCAGT
CGGCCGCCGCCGCTGGCCCCGGGGATCCGAAGAGGAAGGGCGGTCCGGGCTCCACACTTAGCTTCGTGGG
CAAACGCAGAGGCGGGAACAAACTAGCCCTCAAGACGGGAATAGTAGCCAAGAAGCAGAAGACGGAGGAT
GAGGTATTAACAAGTAAAGGTGACGCGTGGGCCAAGTACATGGCAGAAGTGAAAAAGTACAAAGCTCACC
AGTGCGGTGACGATGATAAAACTCGGCCCCTGGTGAAATGA

Translation (176 aa):
MAARGRRAEPQGREAPGPAGGGGGGSRWAESGSGTSPESGDEEVSGAGSSPVSGGVNLFANDGSFLELFK
RKMEEEQRQRQEEPPPGPQRPDQSAAAAGPGDPKRKGGPGSTLSFVGKRRGGNKLALKTGIVAKKQKTED
EVLTSKGDAWAKYMAEVKKYKAHQCGDDDKTRPLVK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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