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Report for CCDS12048.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12048.1 Public Homo sapiens 19 R3HDM4 24 110 108 CCDS HistoryNCBI Gene:91300Re-query CCDS DB by CCDS ID:12048.1Re-query CCDS DB by GeneID:91300See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12048.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000361574.10 ENSP00000355385.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000361574.10Link to Ensembl Protein Viewer:ENSP00000355385.4Re-query CCDS DB by Nucleotide ID:ENST00000361574Re-query CCDS DB by Protein ID:ENSP00000355385
Original member Current member NCBI NM_138774.4 NP_620129.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_138774.4Link to Protein Sequence:NP_620129.2Re-query CCDS DB by Nucleotide ID:NM_138774Re-query CCDS DB by Protein ID:NP_620129Link to BLAST:NP_620129.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_620129.2 268 Q96D70 268 100% 0 0

Chromosomal Locations for CCDS 12048.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 897437 897540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 899440 899495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 899601 899686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 900061 900146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 900829 900952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 901422 901546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 901976 902130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 913087 913157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (807 nt):
ATGGTCGCGCTGGAGAACCCCGAGTGCGGCCCGGAGGCGGCGGAGGGCACCCCGGGCGGGCGGCGGCTGC
TGCCCCTTCCCAGCTGCCTGCCTGCCCTAGCCAGCTCCCAGGTGAAGAGACTCTCGGCTTCCAGGCGGAA
ACAGCACTTCATCAACCAGGCAGTGCGGAACTCAGACCTCGTGCCCAAGGCCAAGGGGCGGAAGAGCCTC
CAGCGCCTGGAGAACACCCAGTACCTCCTGACCCTGCTGGAGACAGACGGGGGCCTGCCTGGCCTGGAGG
ATGGGGACTTGGCACCCCCTGCATCACCAGGCATCTTTGCCGAGGCCTGCAACAACGCCACCTATGTGGA
GGTCTGGAACGATTTCATGAACCGCTCCGGGGAGGAGCAGGAGCGGGTTCTTCGCTACCTGGAGGATGAG
GGCAGGAGCAAGGCGCGGAGGAGGGGCCCTGGCCGTGGGGAGGACCGGAGGAGAGAGGACCCCGCCTATA
CACCCCGCGAGTGCTTCCAGCGCATCAGCCGGCGTCTGCGAGCCGTCCTCAAGCGCAGCCGCATCCCCAT
GGAAACGCTGGAGACCTGGGAGGAGCGGCTGCTTCGGTTCTTCTCCGTGTCCCCCCAGGCCGTGTACACA
GCAATGCTAGACAACAGCTTCGAGAGGCTTCTGCTGCACGCTGTCTGCCAGTACATGGACCTCATCTCGG
CCAGTGCTGACCTGGAGGGGAAGCGGCAGATGAAGGTCAGTAATCGGCACCTGGATTTCCTGCCGCCGGG
GCTGCTCCTGTCCGCCTACCTGGAGCAGCACAGCTGA

Translation (268 aa):
MVALENPECGPEAAEGTPGGRRLLPLPSCLPALASSQVKRLSASRRKQHFINQAVRNSDLVPKAKGRKSL
QRLENTQYLLTLLETDGGLPGLEDGDLAPPASPGIFAEACNNATYVEVWNDFMNRSGEEQERVLRYLEDE
GRSKARRRGPGRGEDRRREDPAYTPRECFQRISRRLRAVLKRSRIPMETLETWEERLLRFFSVSPQAVYT
AMLDNSFERLLLHAVCQYMDLISASADLEGKRQMKVSNRHLDFLPPGLLLSAYLEQHS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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