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Report for CCDS10876.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10876.1 Public Homo sapiens 16 COG8 24 110 108 CCDS HistoryNCBI Gene:84342Re-query CCDS DB by CCDS ID:10876.1Re-query CCDS DB by GeneID:84342See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10876.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000306875.10 ENSP00000305459.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000306875.10Link to Ensembl Protein Viewer:ENSP00000305459.6Re-query CCDS DB by Nucleotide ID:ENST00000306875Re-query CCDS DB by Protein ID:ENSP00000305459
Original member Current member NCBI NM_001379264.1 NP_001366193.1 Accepted alive Link to Nucleotide Sequence:NM_001379264.1Link to Protein Sequence:NP_001366193.1Re-query CCDS DB by Nucleotide ID:NM_001379264Re-query CCDS DB by Protein ID:NP_001366193Link to BLAST:NP_001366193.1
Original member Current member NCBI NM_032382.5 NP_115758.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032382.5Link to Protein Sequence:NP_115758.3Re-query CCDS DB by Nucleotide ID:NM_032382Re-query CCDS DB by Protein ID:NP_115758Link to BLAST:NP_115758.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001366193.1 612 Q96MW5 612 100% 0 0
NP_115758.3 612 Q96MW5 612 100% 0 0

Chromosomal Locations for CCDS 10876.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 69330839 69331095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 69332714 69332882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 69334521 69335348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 69336505 69336712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 69339176 69339552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1839 nt):
ATGGCGACCGCGGCGACTATCCCATCGGTAGCCACGGCCACAGCAGCGGCTCTCGGCGAGGTGGAGGATG
AAGGGCTCCTGGCGTCGCTGTTCCGGGACCGCTTCCCCGAGGCCCAGTGGCGCGAGCGGCCCGATGTGGG
CCGCTACCTCCGGGAGTTGAGCGGCTCGGGGCTGGAGCGGCTGCGGCGCGAGCCCGAGCGCCTGGCGGAG
GAGCGGGCGCAGCTGCTGCAGCAGACGCGCGACTTGGCCTTCGCTAACTACAAGACCTTCATCCGCGGCG
CCGAGTGCACCGAGCGCATCCACCGCCTGTTTGGCGACGTGGAGGCGTCGCTCGGCCGCCTGCTCGACCG
TTTGCCCAGCTTCCAGCAGAGCTGCAGGAACTTTGTGAAGGAAGCCGAGGAGATCAGCTCCAACCGCCGG
ATGAATAGCCTGACCCTAAACCGGCACACAGAAATTTTGGAAATACTGGAGATTCCTCAGCTCATGGACA
CCTGTGTCCGGAACAGTTATTATGAAGAGGCCCTGGAGCTTGCAGCCTACGTACGCCGACTGGAGAGGAA
ATACTCTTCCATCCCTGTCATCCAGGGCATCGTGAACGAAGTGCGCCAGTCCATGCAGCTGATGCTGAGC
CAGCTGATCCAGCAACTGAGGACCAACATCCAGCTTCCTGCCTGCCTCCGTGTCATTGGCTACCTGCGGC
GCATGGACGTCTTCACTGAGGCTGAGTTGAGGGTGAAGTTTCTTCAGGCCCGAGATGCTTGGCTCCGGTC
CATCCTGACTGCCATTCCTAATGATGATCCCTATTTCCATATTACAAAAACCATCGAGGCCTCCCGTGTC
CATCTCTTTGATATCATCACCCAGTACCGTGCCATCTTCTCAGACGAGGACCCACTGCTGCCCCCTGCCA
TGGGTGAGCACACTGTGAATGAGAGTGCCATCTTCCATGGCTGGGTGCTACAGAAGGTCTCACAATTCCT
GCAGGTGCTGGAGACCGACCTTTACCGGGGCATAGGCGGCCACCTGGACTCTCTGCTGGGCCAGTGCATG
TACTTTGGGCTGTCCTTCAGCCGGGTGGGAGCTGATTTCCGGGGTCAGTTGGCTCCTGTTTTCCAGCGGG
TGGCCATCAGCACTTTCCAGAAAGCAATTCAGGAAACAGTGGAGAAATTCCAGGAAGAAATGAACTCCTA
CATGCTCATCTCGGCTCCAGCCATCCTGGGCACCAGTAACATGCCTGCTGCTGTGCCAGCCACCCAGCCG
GGGACGCTGCAGCCACCCATGGTGCTCCTAGATTTCCCACCCCTCGCCTGCTTTCTCAACAATATTCTGG
TTGCCTTCAATGATCTGCGCCTCTGCTGCCCTGTGGCCCTGGCGCAGGATGTGACTGGGGCCTTGGAAGA
TGCCCTTGCCAAGGTAACTAAAATAATCCTGGCCTTCCATCGCGCTGAAGAGGCTGCCTTCAGCAGCGGG
GAGCAAGAGCTCTTTGTCCAGTTCTGCACTGTCTTCCTGGAAGACCTTGTTCCGTATTTAAATCGCTGTC
TCCAAGTCCTTTTTCCACCAGCTCAGATAGCACAGACTTTAGGCATTCCTCCCACTCAGCTCTCCAAGTA
CGGTAACCTAGGGCATGTGAACATCGGCGCCATTCAGGAGCCCCTCGCCTTTATCCTGCCAAAGAGAGAG
ACGCTTTTCACCCTGGATGACCAGGCGCTGGGGCCCGAGCTCACAGCTCCAGCACCAGAGCCTCCCGCCG
AGGAGCCACGCCTGGAGCCCGCGGGCCCAGCCTGCCCGGAGGGAGGGCGAGCGGAGACGCAGGCCGAACC
GCCCAGCGTGGGGCCCTAG

Translation (612 aa):
MATAATIPSVATATAAALGEVEDEGLLASLFRDRFPEAQWRERPDVGRYLRELSGSGLERLRREPERLAE
ERAQLLQQTRDLAFANYKTFIRGAECTERIHRLFGDVEASLGRLLDRLPSFQQSCRNFVKEAEEISSNRR
MNSLTLNRHTEILEILEIPQLMDTCVRNSYYEEALELAAYVRRLERKYSSIPVIQGIVNEVRQSMQLMLS
QLIQQLRTNIQLPACLRVIGYLRRMDVFTEAELRVKFLQARDAWLRSILTAIPNDDPYFHITKTIEASRV
HLFDIITQYRAIFSDEDPLLPPAMGEHTVNESAIFHGWVLQKVSQFLQVLETDLYRGIGGHLDSLLGQCM
YFGLSFSRVGADFRGQLAPVFQRVAISTFQKAIQETVEKFQEEMNSYMLISAPAILGTSNMPAAVPATQP
GTLQPPMVLLDFPPLACFLNNILVAFNDLRLCCPVALAQDVTGALEDALAKVTKIILAFHRAEEAAFSSG
EQELFVQFCTVFLEDLVPYLNRCLQVLFPPAQIAQTLGIPPTQLSKYGNLGHVNIGAIQEPLAFILPKRE
TLFTLDDQALGPELTAPAPEPPAEEPRLEPAGPACPEGGRAETQAEPPSVGP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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