NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS10540.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10540.1 Public Homo sapiens 16 ATF7IP2 24 110 108 CCDS HistoryNCBI Gene:80063Re-query CCDS DB by CCDS ID:10540.1Re-query CCDS DB by GeneID:80063See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10540.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000356427.2 ENSP00000348799.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000356427.2Link to Ensembl Protein Viewer:ENSP00000348799.2Re-query CCDS DB by Nucleotide ID:ENST00000356427Re-query CCDS DB by Protein ID:ENSP00000348799
Original member Current member EBI ENST00000396560.6 ENSP00000379808.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000396560.6Link to Ensembl Protein Viewer:ENSP00000379808.2Re-query CCDS DB by Nucleotide ID:ENST00000396560Re-query CCDS DB by Protein ID:ENSP00000379808
Original member Current member EBI ENST00000562102.6 ENSP00000457731.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000562102.6Link to Ensembl Protein Viewer:ENSP00000457731.2Re-query CCDS DB by Nucleotide ID:ENST00000562102Re-query CCDS DB by Protein ID:ENSP00000457731
Original member Current member NCBI NM_001352120.2 NP_001339049.1 Accepted alive Link to Nucleotide Sequence:NM_001352120.2Link to Protein Sequence:NP_001339049.1Re-query CCDS DB by Nucleotide ID:NM_001352120Re-query CCDS DB by Protein ID:NP_001339049Link to BLAST:NP_001339049.1
Original member Current member NCBI NM_001393719.1 NP_001380648.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001393719.1Link to Protein Sequence:NP_001380648.1Re-query CCDS DB by Nucleotide ID:NM_001393719Re-query CCDS DB by Protein ID:NP_001380648Link to BLAST:NP_001380648.1
Original member Current member NCBI NM_024997.5 NP_079273.2 Accepted alive Link to Nucleotide Sequence:NM_024997.5Link to Protein Sequence:NP_079273.2Re-query CCDS DB by Nucleotide ID:NM_024997Re-query CCDS DB by Protein ID:NP_079273Link to BLAST:NP_079273.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001339049.1 682 Q5U623-1 682 100% 0 0
NP_001380648.1 682 Q5U623-1 682 100% 0 0
NP_079273.2 682 Q5U623-1 682 100% 0 0

Chromosomal Locations for CCDS 10540.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 10430621 10431455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10433525 10433649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10438101 10438235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10440364 10440462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10457372 10457529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10472110 10472183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10473479 10473534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10473923 10473989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10480879 10480964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10481836 10482249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2049 nt):
ATGGCAAGTCCAGATAGAAGTAAACGGAAGATATTAAAAGCCAAAAAGACAATGCCCCTAAGTTGCCGGA
AGCAAGTAGAGATGCTGAATAAGTCAAGGAATGTTGAAGCGCTGAAAACAGCAATTGGGAGTAATGTTCC
AAGCGGTAATCAGAGTTTCAGTCCTAGTGTCATAACTAGGACGACTGAAATAACCAAATGTAGCCCTTCT
GAAAATGGTGCATCCTCATTGGACTCTAATAAAAATTCAATATCAGAGAAAAGTAAAGTATTCTCTCAGA
ATTGCATAAAACCAGTAGAAGAAATTGTTCATTCAGAAACAAAATTGGAACAAGTTGTTTGTTCGTACCA
AAAGCCAAGTAGAACAACAGAATCCCCCAGCAGAGTCTTCACAGAAGAGGCAAAAGATTCACTGAACACT
TCTGAAAACGATTCTGAGCATCAGACAAATGTAACAAGATCCCTTTTTGAGCATGAGGGGGCTTGTAGTC
TAAAGTCCAGTTGCTGTCCACCCAGTGTATTGAGTGGTGTTGTTCAGATGCCAGAGTCTACAGTAACCAG
TACCGTGGGTGACAAGAAAACTGACCAGATGGTTTTCCATTTAGAAACAAACTCCAATTCAGAATCACAT
GATAAAAGGCAAAGTGACAACATTTTATGTTCAGAAGACTCAGGTTTTGTGCCTGTTGAGAAAACACCTA
ATTTGGTGAATTCAGTCACTTCTAACAACTGTGCTGATGACATTTTGAAAACTGATGAGTGTAGTAGAAC
CAGTATTTCAAATTGTGAAAGTGCAGACTCAACATGGCAGTCATCACTTGACACTAATAACAACAGCCAT
TATCAAAAGAAGAGGATGTTTTCAGAAAACGAGGAAAATGTTAAACGCATGAAAACTTCAGAGCAAATTA
ATGAAAATATTTGTGTAAGTTTGGAAAGGCAAACAGCATTCCTGGAACAGGTCAGACATTTGATTCAGCA
GGAGATCTATAGCATAAATTATGAACTATTTGATAAGAAACTGAAAGAATTGAACCAACGCATTGGGAAG
ACAGAGTGCAGAAATAAGCATGAAGGAATAGCTGATAAACTTTTGGCAAAAATAGCAAAACTTCAAAGAC
GTATTAAAACAGTATTATTATTTCAAAGGAATTGTTTGAAACCAAACATGTTATCCAGTAATGGAGCCTC
TAAGGTTGCAAATTCAGAGGCTATGATTTTGGATAAGAATCTTGAGTCAGTTAATAGTCCAATTGAAAAG
TCTTCTGTGAATTATGAGCCTTCTAACCCTTCCGAAAAAGGAAGTAAAAAAATTAATTTGTCATCAGATC
AAAATAAGTCTGTTTCTGAAAGTAACAATGATGATGTTATGTTGATTTCTGTGGAAAGTCCTAATTTGAC
AACTCCAATTACATCAAATCCAACAGATACCAGAAAAATTACATCAGGAAATTCTAGCAATTCTCCCAAT
GCTGAAGTTATGGCTGTACAGAAGAAACTTGATTCTATAATTGATTTGACAAAAGAAGGCCTATCCAACT
GCAATACAGAAAGTCCAGTATCCCCCCTGGAGTCACATTCGAAAGCTGCTTCAAACTCAAAGGAAACAAC
CCCATTGGCACAAAATGCAGTCCAGGTTCCTGAGTCCTTTGAGCACCTGCCACCTCTCCCAGAACCACCA
GCACCACTACCTGAATTAGTAGACAAAACCCGAGACACACTTCCTCCCCAGAAGCCTGAGCTCAAAGTGA
AACGGGTTTTCAGACCCAATGGCATTGCCCTGACTTGGAATATAACCAAAATCAATCCCAAGTGTGCTCC
TGTAGAAAGCTACCACCTCTTCCTGTGTCATGAGAACTCTAATAATAAGTTGATTTGGAAGAAGATTGGA
GAAATTAAAGCTTTACCACTCCCCATGGCCTGTACTTTATCTCAGTTTTTAGCTTCCAACAGATACTATT
TTACTGTCCAATCAAAAGATATTTTTGGACGATATGGACCATTCTGTGATATAAAATCTATCCCTGGGTT
TTCTGAAAATCTTACGTAA

Translation (682 aa):
MASPDRSKRKILKAKKTMPLSCRKQVEMLNKSRNVEALKTAIGSNVPSGNQSFSPSVITRTTEITKCSPS
ENGASSLDSNKNSISEKSKVFSQNCIKPVEEIVHSETKLEQVVCSYQKPSRTTESPSRVFTEEAKDSLNT
SENDSEHQTNVTRSLFEHEGACSLKSSCCPPSVLSGVVQMPESTVTSTVGDKKTDQMVFHLETNSNSESH
DKRQSDNILCSEDSGFVPVEKTPNLVNSVTSNNCADDILKTDECSRTSISNCESADSTWQSSLDTNNNSH
YQKKRMFSENEENVKRMKTSEQINENICVSLERQTAFLEQVRHLIQQEIYSINYELFDKKLKELNQRIGK
TECRNKHEGIADKLLAKIAKLQRRIKTVLLFQRNCLKPNMLSSNGASKVANSEAMILDKNLESVNSPIEK
SSVNYEPSNPSEKGSKKINLSSDQNKSVSESNNDDVMLISVESPNLTTPITSNPTDTRKITSGNSSNSPN
AEVMAVQKKLDSIIDLTKEGLSNCNTESPVSPLESHSKAASNSKETTPLAQNAVQVPESFEHLPPLPEPP
APLPELVDKTRDTLPPQKPELKVKRVFRPNGIALTWNITKINPKCAPVESYHLFLCHENSNNKLIWKKIG
EIKALPLPMACTLSQFLASNRYYFTVQSKDIFGRYGPFCDIKSIPGFSENLT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH