NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS10316.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10316.1 Public Homo sapiens 15 TLNRD1 24 110 108 CCDS HistoryNCBI Gene:59274Re-query CCDS DB by CCDS ID:10316.1Re-query CCDS DB by GeneID:59274See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10316.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000267984.4 ENSP00000267984.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000267984.4Link to Ensembl Protein Viewer:ENSP00000267984.2Re-query CCDS DB by Nucleotide ID:ENST00000267984Re-query CCDS DB by Protein ID:ENSP00000267984
Original member Current member NCBI NM_022566.3 NP_072088.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_022566.3Link to Protein Sequence:NP_072088.1Re-query CCDS DB by Nucleotide ID:NM_022566Re-query CCDS DB by Protein ID:NP_072088Link to BLAST:NP_072088.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_072088.1 362 Q9H1K6 362 100% 0 0

Chromosomal Locations for CCDS 10316.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 81002272 81003360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1089 nt):
ATGGCTAGCGGCAGCGCCGGGAAGCCCACTGGCGAGGCGGCTTCTCCGGCTCCTGCGAGCGCCATCGGCG
GGGCCAGCTCGCAGCCGCGGAAGAGGCTGGTATCCGTCTGCGACCACTGCAAGGGCAAGATGCAGCTGGT
GGCTGACCTGCTGCTGCTGTCGAGCGAGGCGCGGCCCGTGCTCTTCGAGGGCCCCGCCTCCTCTGGTGCC
GGCGCCGAGTCCTTCGAGCAGTGCCGGGACACCATCATCGCGCGCACCAAGGGGCTCTCCATCCTCACCC
ACGACGTGCAGAGCCAGCTCAACATGGGCCGCTTCGGGGAGGCGGGGGACAGCCTGGTGGAGCTGGGCGA
CCTGGTGGTGTCGCTGACCGAGTGCTCGGCCCACGCGGCCTATCTGGCCGCTGTGGCCACGCCGGGCGCC
CAGCCCGCGCAGCCGGGCCTGGTGGACCGCTACCGCGTGACGCGATGCCGCCACGAGGTGGAGCAGGGTT
GCGCCGTGCTGCGCGCCACGCCGCTGGCCGACATGACGCCGCAGCTGCTGCTGGAGGTGTCGCAGGGCCT
GTCGCGCAACCTCAAGTTCCTGACGGACGCGTGCGCCCTGGCCAGTGACAAGTCACGGGACCGCTTTTCG
CGGGAGCAGTTCAAGCTGGGCGTCAAGTGCATGAGCACCAGCGCGTCGGCGCTGCTGGCCTGCGTGCGCG
AGGTGAAGGTGGCGCCCAGTGAGCTGGCGCGCAGCCGCTGTGCGCTCTTCAGCGGGCCCCTGGTGCAGGC
AGTGAGCGCCCTGGTAGGCTTCGCCACCGAGCCGCAGTTCCTGGGTCGCGCGGCAGCTGTGAGCGCCGAG
GGCAAGGCGGTGCAGACCGCCATCCTGGGCGGCGCCATGAGCGTGGTGTCGGCCTGCGTGCTCCTGACCC
AGTGCCTCAGGGATCTGGCGCAGCACCCCGACGGGGGCGCCAAGATGTCGGACCACAGGGAGAGGCTGAG
GAACTCGGCCTGCGCCGTGTCTGAAGGCTGCACCCTGCTATCTCAGGCTTTAAGGGAGAGGTCTTCGCCC
AGGACTTTACCGCCAGTGAATTCCAATTCTGTGAATTAG

Translation (362 aa):
MASGSAGKPTGEAASPAPASAIGGASSQPRKRLVSVCDHCKGKMQLVADLLLLSSEARPVLFEGPASSGA
GAESFEQCRDTIIARTKGLSILTHDVQSQLNMGRFGEAGDSLVELGDLVVSLTECSAHAAYLAAVATPGA
QPAQPGLVDRYRVTRCRHEVEQGCAVLRATPLADMTPQLLLEVSQGLSRNLKFLTDACALASDKSRDRFS
REQFKLGVKCMSTSASALLACVREVKVAPSELARSRCALFSGPLVQAVSALVGFATEPQFLGRAAAVSAE
GKAVQTAILGGAMSVVSACVLLTQCLRDLAQHPDGGAKMSDHRERLRNSACAVSEGCTLLSQALRERSSP
RTLPPVNSNSVN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH