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Report for CCDS10299.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10299.2 Public Homo sapiens 15 DNAJA4 24 110 108 CCDS HistoryNCBI Gene:55466Re-query CCDS DB by CCDS ID:10299.2Re-query CCDS DB by GeneID:55466See the combined annotation on chromosome 15 in Sequence Viewer

Public Note for CCDS 10299.1
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript and conservation data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 10299.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000394855.7 ENSP00000378324.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000394855.7Link to Ensembl Protein Viewer:ENSP00000378324.3Re-query CCDS DB by Nucleotide ID:ENST00000394855Re-query CCDS DB by Protein ID:ENSP00000378324
Original member Current member NCBI NM_018602.4 NP_061072.3 Accepted alive Link to Nucleotide Sequence:NM_018602.4Link to Protein Sequence:NP_061072.3Re-query CCDS DB by Nucleotide ID:NM_018602Re-query CCDS DB by Protein ID:NP_061072Link to BLAST:NP_061072.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061072.3 426 Q8WW22-2 426 100% 0 0

Chromosomal Locations for CCDS 10299.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 78264314 78264393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78264757 78264895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78270497 78270677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78273095 78273199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78274197 78274424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78275498 78275728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78280045 78280145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78280245 78280460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1281 nt):
ATGGCCCGGGGCGGCAGTCAGAGCTGGAGCTCCGGGGAATCAGACGGGCAGCCAAAGGAGCAGACGCCCG
AGAAGCCCAGACACAAGATGGTGAAGGAGACCCAGTACTATGACATCCTGGGCGTGAAGCCCAGCGCGTC
CCCGGAGGAGATCAAGAAGGCCTATCGGAAGCTGGCGCTCAAGTACCACCCGGACAAGAACCCGGATGAG
GGCGAGAAGTTTAAACTCATATCCCAGGCATATGAAGTGCTTTCAGATCCAAAGAAAAGGGATGTTTATG
ACCAAGGCGGAGAGCAGGCAATTAAAGAAGGAGGCTCAGGCAGCCCCAGCTTCTCTTCACCCATGGACAT
CTTTGACATGTTCTTTGGTGGTGGTGGACGGATGGCTAGAGAGAGAAGAGGCAAGAATGTTGTACACCAG
TTATCTGTAACTCTTGAAGATCTATATAATGGAGTCACGAAGAAATTGGCCCTCCAGAAAAATGTAATTT
GTGAGAAATGTGAAGGTGTTGGTGGGAAGAAGGGATCGGTGGAGAAGTGCCCGCTGTGCAAGGGGCGGGG
GATGCAGATCCACATCCAGCAGATCGGGCCGGGCATGGTACAGCAGATCCAGACCGTGTGCATCGAGTGC
AAGGGCCAGGGTGAGCGCATCAACCCCAAGGACCGCTGCGAGAGCTGCAGCGGGGCCAAGGTGATCCGTG
AGAAGAAGATTATCGAGGTACATGTTGAAAAAGGTATGAAAGATGGGCAAAAGATACTATTTCATGGAGA
AGGAGATCAGGAGCCTGAGCTGGAGCCTGGTGATGTCATAATTGTGCTTGATCAGAAGGATCATAGTGTC
TTTCAGAGACGAGGCCATGACTTGATCATGAAAATGAAAATTCAGCTTTCTGAAGCTCTTTGTGGCTTCA
AGAAGACGATAAAAACATTGGACAATCGAATTCTTGTTATTACATCCAAAGCAGGTGAGGTGATAAAGCA
CGGGGACCTGAGATGCGTGCGCGATGAAGGAATGCCCATCTACAAAGCACCCCTGGAAAAAGGGATTCTG
ATCATACAGTTTTTAGTAATCTTTCCTGAAAAACACTGGCTTTCTCTGGAAAAGCTTCCTCAGCTGGAAG
CTTTACTCCCTCCTCGACAGAAAGTGAGGATTACAGATGACATGGATCAGGTGGAGCTGAAGGAGTTTTG
TCCCAATGAGCAGAACTGGCGTCAGCACAGGGAGGCCTACGAGGAGGACGAAGACGGGCCCCAGGCTGGA
GTGCAGTGCCAGACGGCATGA

Translation (426 aa):
MARGGSQSWSSGESDGQPKEQTPEKPRHKMVKETQYYDILGVKPSASPEEIKKAYRKLALKYHPDKNPDE
GEKFKLISQAYEVLSDPKKRDVYDQGGEQAIKEGGSGSPSFSSPMDIFDMFFGGGGRMARERRGKNVVHQ
LSVTLEDLYNGVTKKLALQKNVICEKCEGVGGKKGSVEKCPLCKGRGMQIHIQQIGPGMVQQIQTVCIEC
KGQGERINPKDRCESCSGAKVIREKKIIEVHVEKGMKDGQKILFHGEGDQEPELEPGDVIIVLDQKDHSV
FQRRGHDLIMKMKIQLSEALCGFKKTIKTLDNRILVITSKAGEVIKHGDLRCVRDEGMPIYKAPLEKGIL
IIQFLVIFPEKHWLSLEKLPQLEALLPPRQKVRITDDMDQVELKEFCPNEQNWRQHREAYEEDEDGPQAG
VQCQTA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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