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Report for CCDS10046.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10046.1 Public Homo sapiens 15 TMCO5A 24 110 108 CCDS HistoryNCBI Gene:145942Re-query CCDS DB by CCDS ID:10046.1Re-query CCDS DB by GeneID:145942See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10046.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000319669.5 ENSP00000327234.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000319669.5Link to Ensembl Protein Viewer:ENSP00000327234.4Re-query CCDS DB by Nucleotide ID:ENST00000319669Re-query CCDS DB by Protein ID:ENSP00000327234
Original member Current member NCBI NM_001370735.1 NP_001357664.1 Accepted alive Link to Nucleotide Sequence:NM_001370735.1Link to Protein Sequence:NP_001357664.1Re-query CCDS DB by Nucleotide ID:NM_001370735Re-query CCDS DB by Protein ID:NP_001357664Link to BLAST:NP_001357664.1
Original member Current member NCBI NM_152453.4 NP_689666.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152453.4Link to Protein Sequence:NP_689666.2Re-query CCDS DB by Nucleotide ID:NM_152453Re-query CCDS DB by Protein ID:NP_689666Link to BLAST:NP_689666.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001357664.1 288 Q8N6Q1-1 288 100% 0 0
NP_689666.2 288 Q8N6Q1-1 288 100% 0 0

Chromosomal Locations for CCDS 10046.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 37936324 37936463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 37936847 37936970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 37937346 37937396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 37938158 37938229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 37941149 37941205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 37941671 37941730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 37942191 37942255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 37943341 37943398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 37947656 37947696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 37951036 37951234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (867 nt):
ATGGAAATCTCAAGATTGGCTCAGTCAAAAAGAAACATTATCAGTTTGAACATGGACCTTGAAAGGGATA
CG
CAGAGAATAGATGAAGCAAATCAGAAACTTCTTCTCAAAATCCAAGAGAGGGAAGATAAGATTCAGAG
G
CTGGAAAGTGAGATCATTCAGACGCGGGGCCTGGTGGAAGATGAAGAGTGGGAGAAGGAGAACCGCACC
ACG
ATGGAAAGGGAAAGAGCCTTGCAGGAGCTGGAGGAAGAAACAGCCAGACTTGAAAGGAAGAATAAGA
CG
TTGGTCCACAGTATAACAGAACTTCAACAAAAGCTTACAAGGAAATCACAAAAGATAACCAATTGTGA
A
CAAAGCAGTCCAGATGGAGCCCTAGAAGAGACAAAGGTTAAGTTACAACAGCTGGAAGCTTCCTATGCA
TGC
CAAGAGAAGGAGCTGCTCAAGGTAATGAAGGAGTATGCATTTGTGACCCAGCTCTGTGAAGATCAAG
CC
CTCTACATAAAGAAGTACCAGGAAACGTTGAAGAAAATAGAAGAAGAACTAGAGGCTCTGTTCCTTGA
G
AGAGAAGTATCAAAACTCGTGAGCATGAACCCTGTGGAAAAAGAGCATACCAGCCAAAATAATGAGGGT
ACT
CCTACCCAAAAGACAGCAAGATTATTCAGTAAAAAGATTTTTTGCTGTCTCTTTTTCATCACCCTAT
TT
TTCATCAGACTGCTGAGCTACATGTTTTTTCATGTAAGATTCATAAATCCAGATCTCCTCGTCAATGT
A
CTGCCCAAGGTACTGGGCAGGAGCACCTTGTGGAAGCTCAGATGCTTCTTCTTTCCATCTCTCACACTT
GAG
ACAGAGGACATGTTACCCCACTGA


Translation (288 aa):
MEISRLAQSKRNIISLNMDLERDTQRIDEANQKLLLKIQEREDKIQRLESEIIQTRGLVEDEEWEKENRT
T
MERERALQELEEETARL
ERKNKTLVHSITELQQKLTRKSQKITNCEQSSPDGALEETKVKLQQLEASYA
C
QEKELLK
VMKEYAFVTQLCEDQALYIKKYQETLKKIEEELEALFLEREVSKLVSMNPVEKEHTSQNNEG
T
PTQKTARLFSK
KIFCCLFFITLFFIRLLSYMFFHVRFINPDLLVNVLPKVLGRSTLWKLRCFFFPSLTL
E
TEDMLPH




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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