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Report for CCDS9953.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9953.1 Public Homo sapiens 14 HHIPL1 24 110 108 CCDS HistoryNCBI Gene:84439Re-query CCDS DB by CCDS ID:9953.1Re-query CCDS DB by GeneID:84439See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9953.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000357223.2 ENSP00000349757.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000357223.2Link to Ensembl Protein Viewer:ENSP00000349757.2Re-query CCDS DB by Nucleotide ID:ENST00000357223Re-query CCDS DB by Protein ID:ENSP00000349757
Original member Current member NCBI NM_032425.5 NP_115801.3 Accepted alive Link to Nucleotide Sequence:NM_032425.5Link to Protein Sequence:NP_115801.3Re-query CCDS DB by Nucleotide ID:NM_032425Re-query CCDS DB by Protein ID:NP_115801Link to BLAST:NP_115801.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_115801.3 608 Q96JK4-2 608 100% 0 0

Chromosomal Locations for CCDS 9953.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 99645208 99645462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 99652224 99652870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 99657000 99657143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 99659428 99659756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 99660280 99660406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 99662876 99663021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 99668222 99668303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 99668832 99668928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1827 nt):
ATGGCCCGGGCCAGGGCCGGGGCGCTGCTGGCGCTTTGGGTGCTCGGGGCCGCCGCGCATCCGCAGTGCC
TGGACTTCAGGCCGCCCTTCCGGCCGACGCAGCCGCTGCGCCTCTGCGCGCAGTACTCGGACTTCGGCTG
CTGCGATGAGGGGCGCGACGCCGAGCTGACCCGCCGCTTCTGGGCCCTGGCGAGCCGCGTGGACGCCGCC
GAGTGGGCCGCGTGCGCCGGCTACGCGAGGGACCTGCTGTGCCAGGAATGCTCGCCGTATGCAGCCCACC
TCTATGACGCCGAGGACCCATTCACGCCCCTGCGCACGGTGCCCGGGCTCTGCCAGGATTACTGCCTGGA
CATGTGGCATAAGTGCCGGGGGCTGTTCCGTCACCTGTCAACTGACCAGGAGCTCTGGGCGCTGGAGGGC
AACCTTGCCAGGTTCTGCCGCTACCTGTCCCTGGATGACACGGACTACTGCTTCCCTTACCTGCTGGTCA
ACAAGAACCTCAACTCAAACCTGGGCCACGTGGTAGCCGATGCCAAGGGCTGCCTGCAGCTGTGCCTGGA
GGAGGTGGCCAACGGGCTGCGCAACCCCGTGGCCATGGTCCATGCCAGGGATGGCACCCACCGCTTCTTC
GTGGCCGAGCAGGTGGGGCTGGTGTGGGCCTACCTGCCCGACCGCTCGAGGCTGGGGAAGCCTTTCCTGA
ACATCAGCCGGGTGGTGCTCACCTCGCCCTGGGAGGGTGACGAGCGTGGCTTCCTGGGCATTGCCTTCCA
CCCCAGCTTCCAGCACAACCGCAGGCTCTACGTCTACTACTCAGTGGGTATCCGCAGCAGTGAGTGGATC
CGCATCAGCGAGTTCAGAGTCTCCGAGGATGACGAGAACGCCGTGGACCACAGCTCTGAGAGGATAATCC
TGGAGGTCAAAGAACCAGCCTCAAACCACAACGGGGGCCAGCTGCTTTTCGGGGATGACGGGTACCTCTA
CATCTTCACTGGAGATGGCGGGATGGCCGGAGACCCCTTTGGGACATTTGGAAATGCCCAAAACAAGTCG
GCGCTGCTGGGCAAGGTGCTGCGCATCGACGTGGACCGTAAGGAGCGCGGCCTGCCCTACGGCATCCCGC
CCGACAACCCGTTCGTGGGCGACCCCGCGGCGCAGCCCGAGGTCTACGCCCTGGGCGTGCGCAACATGTG
GCGCTGCTCCTTCGACCGTGGCGACCCCTCCTCGGGCACTGGCCGCGGGCGCCTCTTCTGCGGCGACGTG
GGCCAGAACAAGTTCGAGGAGGTGGACGTGGTGGAGCGCGGCGGCAACTATGGCTGGCGCGCGCGCGAAG
GGTTCGAGTGCTACGACCGCAGCCTGTGCGCCAACACCTCTCTCAATGACTTGCTGCCGATTTTCGCCTA
CCCGCACACGGTTGGCAAGTCGGTCACAGGGGGCTACGTGTACCGGGGCTGCGAGTACCCCAACCTGAAC
GGCCTCTACATTTTTGGGGATTTCATGAGCGGGCGTCTGATGTCCCTCCAAGAGAACCCAGGGACAGGCC
AGTGGCAGTACAGTGAGATCTGCATGGGCCACGGCCAGACCTGTGAGTTCCCAGGCCTCATCAACAACTA
CTACCCGTACATCATCTCCTTCGGGGAGGACGAGGCCGGGGAGCTGTACTTCATGTCGACAGGGGAGCCG
AGTGCCACAGCTCCACGCGGAGTTGTCTACAAAATAATTGACGCATCCAGCTGTAAGGCCAGAAGCGCCA
TGCCCGGCTATGTCCCAGCTCCTTCCGTGTGCAGCTCATTGACGTCTCAGCCGTTCATTTTACAGTGGTG
GAAATGA

Translation (608 aa):
MARARAGALLALWVLGAAAHPQCLDFRPPFRPTQPLRLCAQYSDFGCCDEGRDAELTRRFWALASRVDAA
EWAACAGYARDLLCQECSPYAAHLYDAEDPFTPLRTVPGLCQDYCLDMWHKCRGLFRHLSTDQELWALEG
NLARFCRYLSLDDTDYCFPYLLVNKNLNSNLGHVVADAKGCLQLCLEEVANGLRNPVAMVHARDGTHRFF
VAEQVGLVWAYLPDRSRLGKPFLNISRVVLTSPWEGDERGFLGIAFHPSFQHNRRLYVYYSVGIRSSEWI
RISEFRVSEDDENAVDHSSERIILEVKEPASNHNGGQLLFGDDGYLYIFTGDGGMAGDPFGTFGNAQNKS
ALLGKVLRIDVDRKERGLPYGIPPDNPFVGDPAAQPEVYALGVRNMWRCSFDRGDPSSGTGRGRLFCGDV
GQNKFEEVDVVERGGNYGWRAREGFECYDRSLCANTSLNDLLPIFAYPHTVGKSVTGGYVYRGCEYPNLN
GLYIFGDFMSGRLMSLQENPGTGQWQYSEICMGHGQTCEFPGLINNYYPYIISFGEDEAGELYFMSTGEP
SATAPRGVVYKIIDASSCKARSAMPGYVPAPSVCSSLTSQPFILQWWK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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