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Report for CCDS9921.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9921.1 Public Homo sapiens 14 PPP4R4 24 110 108 CCDS HistoryNCBI Gene:57718Re-query CCDS DB by CCDS ID:9921.1Re-query CCDS DB by GeneID:57718See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9921.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000304338.8 ENSP00000305924.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000304338.8Link to Ensembl Protein Viewer:ENSP00000305924.3Re-query CCDS DB by Nucleotide ID:ENST00000304338Re-query CCDS DB by Protein ID:ENSP00000305924
Original member Current member NCBI NM_058237.2 NP_478144.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_058237.2Link to Protein Sequence:NP_478144.1Re-query CCDS DB by Nucleotide ID:NM_058237Re-query CCDS DB by Protein ID:NP_478144Link to BLAST:NP_478144.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_478144.1 873 Q6NUP7-1 873 100% 0 0

Chromosomal Locations for CCDS 9921.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 94174466 94174582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 94176054 94176127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 94208464 94208566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 94230587 94230734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 94231242 94231315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 94233653 94233759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 94234562 94234669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 94237565 94237686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 94240673 94240795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 94241788 94241957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 94242289 94242408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 94244635 94244712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 94245587 94245670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 94246357 94246539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 94250172 94250277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 94251749 94251896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 94256460 94256604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 94258783 94258824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 94259295 94259369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 94264878 94264947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 94265387 94265473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 94265794 94265887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 94266959 94267029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 94275374 94275521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 94278619 94278643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2622 nt):
ATGCATCCGCCGCCGCCCGCCGCCGCGATGGATTTCAGTCAGAACAGCCTGTTCGGTTACATGGAGGACC
TGCAGGAGCTCACCATCATCGAGAGGCCGGTCCGCCGGAGCCTCAAGACACCGGAAGAAATAGAAAGATT
GACAGTCGATGAAGACCTCAGTGATATTGAAAGGGCTGTTTATCTGCTCAGTGCTGGTCAAGATGTCCAA
GGAACAAGTGTGATTGCAAATCTCCCATTTTTGATGCGACAGAATCCCACTGAGACGCTTCGGAGAGTGT
TGCCAAAAGTCAGAGAAGCCCTGCATGTTGCAGGAGTGGAAATGCAGTTAACGGCTGCGATGTCATTTCT
GACCATTCTGCAGGACGAATCAGTGTCAATTCATGCATATACCCACTCATTCCTCCAAGTCATTCTCCTG
CATCTGGAGCACAGGGACACAGGTGTCAGCAATGCATGGCTGGAAACTCTTCTGTCTGTTATAGAAGTAT
TGCCAAAAGAAACCCTACGGCATGAGATTTTGAATCCACTTGTTTCCAAGGCACAACTTTCCCAAACAGT
CCAGTCTCGTTTAGTTAGTTGTAAAATTTTAGGAAAATTGACCAACAAATTTGATGCCCACACCATTAAG
CGAGAAATACTTCCTCTGGTAAAATCACTCTGTCAAGATGTAGAATATGAAGTTCGATCTTGTATGTGTC
GGCAATTAGAAAATATAGCCCAGGGCATTGGGACAGAACTTACAAAAAGTGTGGTGCTCCCTGAATTAAT
AGAACTTTCTAGGGATGAAGGCAGCAGTGTACGACTTGCAGCTTTTGAAACTTTGGTTAATCTGCTTGAT
ATATTTGATACAGATGACAGAAGTCAAACTATACTTCCCTTAGTGAAATCATTTTGTGAAAAATCTTTCA
AAGCAGATGAATCAATTCTTATTTCTTTATCTTTCCATTTAGGAAAACTATGTCATGGACTATATGGAAT
TTTCACTCCAGATCAGCACTTGAGATTTTTGGAATTTTATAAGAAACTTTGTACATTGGGTTTGCAACAA
GAAAATGGACACAATGAAAACCAGATTCCACCCCAAATCCTAGAGCAGGAGAAGAAATATATTTCAGTAC
GGAAGAACTGTGCTTATAACTTTCCGGCCATGATTGTTTTTGTTGATCCTAAAAACTTCCACATGGAACT
CTATTCTACATTCTTCTGCCTTTGCCATGACCCTGAAGTACCAGTCAGATACACTATTGCTATTTGCTTT
TATGAAGTATCTAAGCTTCTGAATTCTGGAGTATATTTAATACATAAAGAACTAATAACATTATTACAAG
ATGAATCACTGGAGGTACTAGATGCTCTTATAGATCATCTTCCAGAAATCTTGGAACTTATGTCTACTGG
TGGAGAAAGCAGTGTTCAAGAAAATAAGTTATCTTCTCTGCCTGACTTGATTCCAGCACTCACAGCTGCT
GAACAGCGAGCTGCAGCCTCTTTAAAATGGAGAACTCATGAGAAGCTACTTCAGAAATATGCCTGCCTGC
CACATGTCATATCAAGCGATCAGATTTATTACCGTTTCTTACAAAGAATGTTCACAATCATGATGACAAA
TAATGTTTTACCTGTCCAAAAGGCGGCTTCACGAACTCTATGCATTTTTCTGCGTTATAATCGTAAACAA
GAACAGAGACATGAGGTCATTCAAAAATTAATTGAACAATTGGGCCAAGGAAAAAGTTACTGGAATAGAC
TTCGATTTTTGGATACCTGTGAATTTATTATAGAGATATTTTCAAAATCATTTTTCTGTAAATATTTCTT
TCTACCTGCTATTGAACTGACACATGATCCAGTAGCAAATGTGAGAATGAAACTTTGCTACCTGTTGCCC
AAAGTGAAATCTACTCTGAAGATTCCTGCTGATAAGCATCTACTTCAGCAGTTAGAAATGTGTGTGAGGA
AACTCCTGTGTCAAGAAAAAGATAAAGATGTTCTGGCTATTGTAAAAAGAACTGTATTAGAGTTGGACAG
AATGGAAATGTCTATGGATGCTTTTCAGAAAAAGTTTTATGAGAAAGATTTGTTGGATCAAGAGAAAGAA
AGAGAAGAACTACTTCTTTTGGAAATGGAACAATTAGAGAAAGAAAAGCAACAGAATGATGGAAGGCCCA
TGAGTGATAAAATGTTTGAAAAGAAACGTAGAGACACTAAGACACCAACGCAAAGTCTGCCCAAGAACAT
CCCCATTTCTGTTCCTGGACCCTCTTCTGTCACCCCATCGACAAGTAAAGAAATCAAGAAATCCAAACTG
ATTCGAAGCCAGTCTTTTAATAATCAAGCTTTTCATGCAAAATATGGCAACTTAGAGAAATGTGCTAGTA
AAAGTTCTACAACAGGATATACAACTTCTGTCTCAGGGTTAGGAAAGACTTCTGTGCTTTCACTAGCTGA
TGATTCATTCCGGACTCGTAATGCCAGTAGCGTTCCATCTTCCTTTTCTCCTAATACTCCCTTACCGAGT
ACTTCCCGTGGGACAGGTAACTCAGTTGACCCCAAGAGCAGTGGAAGTAAAGATACACAACCACGGAAGG
CTACCTTAAAATCCAGAAAATCCAATCCTTAA

Translation (873 aa):
MHPPPPAAAMDFSQNSLFGYMEDLQELTIIERPVRRSLKTPEEIERLTVDEDLSDIERAVYLLSAGQDVQ
GTSVIANLPFLMRQNPTETLRRVLPKVREALHVAGVEMQLTAAMSFLTILQDESVSIHAYTHSFLQVILL
HLEHRDTGVSNAWLETLLSVIEVLPKETLRHEILNPLVSKAQLSQTVQSRLVSCKILGKLTNKFDAHTIK
REILPLVKSLCQDVEYEVRSCMCRQLENIAQGIGTELTKSVVLPELIELSRDEGSSVRLAAFETLVNLLD
IFDTDDRSQTILPLVKSFCEKSFKADESILISLSFHLGKLCHGLYGIFTPDQHLRFLEFYKKLCTLGLQQ
ENGHNENQIPPQILEQEKKYISVRKNCAYNFPAMIVFVDPKNFHMELYSTFFCLCHDPEVPVRYTIAICF
YEVSKLLNSGVYLIHKELITLLQDESLEVLDALIDHLPEILELMSTGGESSVQENKLSSLPDLIPALTAA
EQRAAASLKWRTHEKLLQKYACLPHVISSDQIYYRFLQRMFTIMMTNNVLPVQKAASRTLCIFLRYNRKQ
EQRHEVIQKLIEQLGQGKSYWNRLRFLDTCEFIIEIFSKSFFCKYFFLPAIELTHDPVANVRMKLCYLLP
KVKSTLKIPADKHLLQQLEMCVRKLLCQEKDKDVLAIVKRTVLELDRMEMSMDAFQKKFYEKDLLDQEKE
REELLLLEMEQLEKEKQQNDGRPMSDKMFEKKRRDTKTPTQSLPKNIPISVPGPSSVTPSTSKEIKKSKL
IRSQSFNNQAFHAKYGNLEKCASKSSTTGYTTSVSGLGKTSVLSLADDSFRTRNASSVPSSFSPNTPLPS
TSRGTGNSVDPKSSGSKDTQPRKATLKSRKSNP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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