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Report for CCDS9897.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9897.1 Public Homo sapiens 14 TC2N 24 110 108 CCDS HistoryNCBI Gene:123036Re-query CCDS DB by CCDS ID:9897.1Re-query CCDS DB by GeneID:123036See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9897.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000340892.9 ENSP00000343199.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000340892.9Link to Ensembl Protein Viewer:ENSP00000343199.5Re-query CCDS DB by Nucleotide ID:ENST00000340892Re-query CCDS DB by Protein ID:ENSP00000343199
Original member Current member EBI ENST00000360594.9 ENSP00000353802.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000360594.9Link to Ensembl Protein Viewer:ENSP00000353802.5Re-query CCDS DB by Nucleotide ID:ENST00000360594Re-query CCDS DB by Protein ID:ENSP00000353802
Original member Current member EBI ENST00000435962.7 ENSP00000387882.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000435962.7Link to Ensembl Protein Viewer:ENSP00000387882.2Re-query CCDS DB by Nucleotide ID:ENST00000435962Re-query CCDS DB by Protein ID:ENSP00000387882
Original member Current member NCBI NM_001128595.3 NP_001122067.2 Accepted alive Link to Nucleotide Sequence:NM_001128595.3Link to Protein Sequence:NP_001122067.2Re-query CCDS DB by Nucleotide ID:NM_001128595Re-query CCDS DB by Protein ID:NP_001122067Link to BLAST:NP_001122067.2
Original member Current member NCBI NM_001128596.3 NP_001122068.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001128596.3Link to Protein Sequence:NP_001122068.2Re-query CCDS DB by Nucleotide ID:NM_001128596Re-query CCDS DB by Protein ID:NP_001122068Link to BLAST:NP_001122068.2
Original member Current member NCBI NM_152332.6 NP_689545.2 Accepted alive Link to Nucleotide Sequence:NM_152332.6Link to Protein Sequence:NP_689545.2Re-query CCDS DB by Nucleotide ID:NM_152332Re-query CCDS DB by Protein ID:NP_689545Link to BLAST:NP_689545.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001122067.2 490 Q8N9U0-1 490 100% 0 0
NP_001122068.2 490 Q8N9U0-1 490 100% 0 0
NP_689545.2 490 Q8N9U0-1 490 100% 0 0

Chromosomal Locations for CCDS 9897.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 91783100 91783210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 91785162 91785361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 91787513 91787627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 91792367 91792558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 91797785 91797901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 91798299 91798399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 91798989 91799064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 91800281 91800372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 91802254 91802421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 91812312 91812545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 91813703 91813769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1473 nt):
ATGGCAACAGAATTTATAAAGAGTTGCTGTGGAGGATGTTTCTATGGTGAAACAGAAAAACACAACTTTT
CTGTGGAAAGAGATTTTAAAGCAGCAGTCCCAAATAGTCAAAATGCTACTATCTCTGTACCTCCATTGAC
TTCTGTTTCTGTAAAGCCTCAGCTTGGCTGTACTGAGGATTATTTGCTTTCCAAATTACCATCTGATGGC
AAAGAAGTACCATTTGTGGTGCCCAAGTTTAAGTTATCTTACATTCAACCCAGGACACAAGAAACTCCTT
CACATCTGGAAGAACTTGAAGGATCTGCCAGAGCATCTTTTGGAGATCGAAAGGTAGAACTTTCCAGTTC
ATCCCAGCACGGACCTAGCTATGATGTGTATAACCCATTCTATATGTATCAGCACATTTCACCTGATTTG
AGTCGACGCTTTCCTCCCCGTTCAGAAGTGAAGAGACTGTATGGATCGGTTTGTGATTTAAGGACGAACA
AACTTCCCGGTTCCCCTGGGCTAAGCAAATCTATGTTTGATCTTACAAACTCATCTCAGCGATTCATCCA
GAGACATGATTCATTGTCCAGTGTACCCAGTAGTTCTTCTTCAAGGAAAAATTCTCAGGGGAGTAACAGA
AGCCTGGATACAATTACTCTATCAGGAGATGAAAGGGACTTTGGGAGACTGAATGTGAAATTGTTTTATA
ATTCTTCAGTAGAACAGATCTGGATCACAGTTTTACAGTGCAGAGATTTAAGTTGGCCCTCTAGTTATGG
AGACACTCCTACTGTTTCTATAAAAGGAATACTTACATTGCCCAAACCAGTGCATTTCAAATCTTCAGCC
AAGGAAGGTTCCAACGCTATTGAATTTATGGAAACGTTTGTATTTGCTATTAAACTTCAAAATCTACAAA
CTGTAAGACTTGTATTTAAGATTCAAACCCAGACTCCCAGGAAGAAAACCATTGGAGAATGCTCAATGTC
ACTCAGAACCCTTAGCACACAGGAAATGGATTACTCTTTGGATATAACACCACCTTCAAAAATTTCTGTT
TGCCATGCAGAACTTGAATTGGGGACTTGTTTTCAAGCAGTAAATAGCAGAATTCAGTTACAAATTCTTG
AGGCACGGTACCTTCCAAGCTCATCAACACCTCTGACTTTGAGTTTTTTCGTGAAGGTGGGAATGTTTAG
CTCGGGAGAGTTGATTTATAAGAAAAAGACACGCTTACTGAAGGCCTCCAATGGAAGAGTCAAGTGGGGA
GAGACTATGATTTTTCCACTTATACAGAGTGAAAAAGAAATTGTTTTTCTCATTAAGCTTTACAGTCGAA
GCTCTGTAAGAAGAAAACACTTTGTGGGCCAGATTTGGATAAGTGAAGACAGTAATAACATTGAAGCAGT
GAACCAGTGGAAAGAGACAGTAATAAATCCAGAAAAGGTTGTTATCAGGTGGCACAAATTAAATCCATCT
TGA

Translation (490 aa):
MATEFIKSCCGGCFYGETEKHNFSVERDFKAAVPNSQNATISVPPLTSVSVKPQLGCTEDYLLSKLPSDG
KEVPFVVPKFKLSYIQPRTQETPSHLEELEGSARASFGDRKVELSSSSQHGPSYDVYNPFYMYQHISPDL
SRRFPPRSEVKRLYGSVCDLRTNKLPGSPGLSKSMFDLTNSSQRFIQRHDSLSSVPSSSSSRKNSQGSNR
SLDTITLSGDERDFGRLNVKLFYNSSVEQIWITVLQCRDLSWPSSYGDTPTVSIKGILTLPKPVHFKSSA
KEGSNAIEFMETFVFAIKLQNLQTVRLVFKIQTQTPRKKTIGECSMSLRTLSTQEMDYSLDITPPSKISV
CHAELELGTCFQAVNSRIQLQILEARYLPSSSTPLTLSFFVKVGMFSSGELIYKKKTRLLKASNGRVKWG
ETMIFPLIQSEKEIVFLIKLYSRSSVRRKHFVGQIWISEDSNNIEAVNQWKETVINPEKVVIRWHKLNPS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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