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Report for CCDS9848.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9848.1 Public Homo sapiens 14 GPATCH2L 24 110 108 CCDS HistoryNCBI Gene:55668Re-query CCDS DB by CCDS ID:9848.1Re-query CCDS DB by GeneID:55668See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9848.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000261530.12 ENSP00000261530.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000261530.12Link to Ensembl Protein Viewer:ENSP00000261530.7Re-query CCDS DB by Nucleotide ID:ENST00000261530Re-query CCDS DB by Protein ID:ENSP00000261530
Original member Current member NCBI NM_017926.4 NP_060396.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017926.4Link to Protein Sequence:NP_060396.2Re-query CCDS DB by Nucleotide ID:NM_017926Re-query CCDS DB by Protein ID:NP_060396Link to BLAST:NP_060396.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060396.2 482 Q9NWQ4-3 482 100% 0 0

Chromosomal Locations for CCDS 9848.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 76154364 76155025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 76166663 76166727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 76171843 76172019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 76173546 76173625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 76176623 76176690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 76177988 76178042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 76180764 76180849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 76195878 76195972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 76201691 76201851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1449 nt):
ATGGATGAGCTGGTACACGACTTAGCCTCAGCCTTGGAGCAGACATCTGAGCAGAATAAGCTTGGTGAAC
TGTGGGAGGAGATGGCGCTGAGCCCCCGACAGCAGAGGCGGCAGCTTCGGAAACGCCGAGGTCGGAAGCG
TCGTTCTGACTTCACTCACCTGGCAGAGCATACCTGCTGCTACAGCGAGGCCTCTGAGTCAAGTCTGGAT
GAGGCCACTAAGGACTGTCGAGAAGTGGCTCCGGTGACCAATTTTAGTGACTCTGATGACACAATGGTAG
CCAAACGACACCCAGCTCTCAATGCCATTGTCAAGAGTAAGCAACATTCTTGGCATGAATCTGACTCCTT
TACTGAAAATGCACCTTGTCGACCACTCAGGCGCAGGCGGAAGGTGAAGCGAGTGACATCAGAGGTGGCT
GCTAGCCTTCAGCAGAAGCTGAAGGTGTCAGATTGGAGCTATGAGAGAGGCTGCAGGTTCAAGTCTGCTA
AGAAGCAGCGTCTGTCCCGCTGGAAGGAGAATACTCCCTGGACCTCATCAGGCCACGGATTGTGTGAATC
AGCAGAAAATAGGACTTTCCTAAGCAAAACAGGAAGGAAAGAAAGGATGGAGTGTGAAACAGATGAACAA
AAACAGGGCTCTGATGAGAACATGTCAGAATGTGAAACCAGCAGTGTGTGTAGCAGCAGTGACACTGGGC
TCTTTACCAATGATGAAGGGCGACAAGGTGATGACGAACAGAGTGATTGGTTCTATGAAGGAGAATGTGT
CCCAGGATTCACTGTCCCTAATCTTCTGCCCAAGTGGGCTCCTGATCATTGTTCTGAAGTAGAAAGAATG
GATTCTGGATTGGATAAATTTTCAGATTCCACATTCCTTTTACCTTCTCGGCCAGCTCAAAGAGGGTACC
ATACTCGCTTGAATCGTCTACCTGGAGCTGCAGCTCGATGCCTCAGAAAGGGGCGAAGAAGGCTGGTTGG
GAAGGAGACCAGCATAAACACTTTGGGGACTGAGAGGATAAGCCATATCATTAGTGACCCTCGGCAGAAA
GAAAAGAATAAAGCGTTGGCTTCTGATTTTCCTCACATTTCTGCTTGTGCACATGAGTTCAATCCCCTGT
CTCCCCTTTACTCCCTGGATGTTCTTGCCGATGCTTCTCACCGAAGGTGTTCACCAGCACACTGCTCTGC
CAGACAGGCAAATGTACACTGGGGACCACCATGTTCACGTGACATCAAGAGGAAGCGGAAACCAGTGGCC
ACAGCATCTTTGTCTAGCCCCAGTGCAGTTCACATGGATGCAGTGGAGCCAACCACACCAGCATCACAAG
CCCCCAAATCACCCAGCTCTGAGTGGTTGGTGAGGACCTCTGCAGCAGAGAAAGCCACAGACGCAACTAC
TGCTACATTTTTTAAAATGCCACAAGAAAAGAGCCCTGGATACAGCTAG

Translation (482 aa):
MDELVHDLASALEQTSEQNKLGELWEEMALSPRQQRRQLRKRRGRKRRSDFTHLAEHTCCYSEASESSLD
EATKDCREVAPVTNFSDSDDTMVAKRHPALNAIVKSKQHSWHESDSFTENAPCRPLRRRRKVKRVTSEVA
ASLQQKLKVSDWSYERGCRFKSAKKQRLSRWKENTPWTSSGHGLCESAENRTFLSKTGRKERMECETDEQ
KQGSDENMSECETSSVCSSSDTGLFTNDEGRQGDDEQSDWFYEGECVPGFTVPNLLPKWAPDHCSEVERM
DSGLDKFSDSTFLLPSRPAQRGYHTRLNRLPGAAARCLRKGRRRLVGKETSINTLGTERISHIISDPRQK
EKNKALASDFPHISACAHEFNPLSPLYSLDVLADASHRRCSPAHCSARQANVHWGPPCSRDIKRKRKPVA
TASLSSPSAVHMDAVEPTTPASQAPKSPSSEWLVRTSAAEKATDATTATFFKMPQEKSPGYS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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