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Report for CCDS984.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
984.1 Public Homo sapiens 1 SEMA6C 24 110 108 CCDS HistoryNCBI Gene:10500Re-query CCDS DB by CCDS ID:984.1Re-query CCDS DB by GeneID:10500See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 984.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000341697.7 ENSP00000344148.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000341697.7Link to Ensembl Protein Viewer:ENSP00000344148.3Re-query CCDS DB by Nucleotide ID:ENST00000341697Re-query CCDS DB by Protein ID:ENSP00000344148
Original member Current member EBI ENST00000368914.8 ENSP00000357910.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000368914.8Link to Ensembl Protein Viewer:ENSP00000357910.3Re-query CCDS DB by Nucleotide ID:ENST00000368914Re-query CCDS DB by Protein ID:ENSP00000357910
Original member Current member NCBI NM_030913.6 NP_112175.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_030913.6Link to Protein Sequence:NP_112175.2Re-query CCDS DB by Nucleotide ID:NM_030913Re-query CCDS DB by Protein ID:NP_112175Link to BLAST:NP_112175.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_112175.2 930 Q9H3T2-1 930 100% 0 0

Chromosomal Locations for CCDS 984.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 151132484 151133517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151134401 151134445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151134620 151134675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151134798 151134875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151135163 151135309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151135591 151135764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151136011 151136163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151136448 151136579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151136857 151137074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151137711 151137799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151137986 151138105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151138316 151138406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151138630 151138731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151139425 151139481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151139638 151139701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151139976 151140090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151142504 151142621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2793 nt):
ATGCCCCGTGCCCCCCACTTCATGCCCTTGCTGCTACTGCTGCTGCTGCTCTCACTTCCCCATACTCAGG
CCGCCTTTCCCCAGGACCCCCTCCCTCTGTTGATCTCTGACCTTCAAGGTACTTCCCCATTATCCTGGTT
TCGGGGCCTGGAGGATGATGCTGTGGCTGCAGAACTTGGGCTGGACTTTCAGAGATTCCTGACCTTGAAC
CGGACCTTGCTAGTGGCTGCCCGGGATCACGTTTTCTCCTTCGATCTTCAAGCCGAAGAAGAAGGGGAGG
GGCTGGTGCCCAACAAGTATCTAACATGGAGAAGCCAAGATGTGGAGAACTGTGCTGTACGGGGAAAGCT
GACGGATGAGTGCTACAACTATATTCGTGTTCTTGTTCCCTGGGACTCCCAGACGCTCCTTGCCTGTGGA
ACGAACTCATTCAGCCCTGTGTGCCGCAGCTATGGGATAACTTCGCTGCAGCAGGAGGGTGAGGAACTGA
GTGGGCAGGCTCGATGCCCCTTTGATGCCACCCAGTCCAACGTGGCCATCTTTGCAGAGGGCAGCCTGTA
CTCAGCCACAGCTGCGGATTTCCAGGCCAGTGATGCTGTAGTTTACAGAAGCCTTGGGCCCCAGCCCCCA
CTCCGCTCCGCCAAGTATGACTCCAAGTGGCTCCGAGAGCCACACTTTGTCCAGGCCTTGGAGCATGGAG
ACCATGTCTACTTCTTCTTCCGCGAGGTCTCTGTGGAGGATGCTCGGCTGGGGAGGGTGCAGTTCTCCCG
CGTAGCCCGAGTATGTAAACGTGACATGGGCGGCTCGCCTCGGGCCTTGGACCGCCACTGGACATCCTTC
CTGAAGCTTCGGCTCAACTGCTCTGTCCCTGGGGACTCTACTTTCTATTTTGATGTTTTACAGGCCTTGA
CTGGGCCTGTGAACCTGCATGGCCGCTCTGCTCTCTTTGGGGTCTTCACCACCCAGACCAATAGCATCCC
TGGCTCTGCCGTCTGCGCCTTCTACCTGGATGAGATTGAGCGTGGGTTTGAGGGCAAGTTCAAGGAGCAG
AGGAGTCTGGATGGGGCCTGGACTCCTGTGTCTGAGGACAGAGTTCCCTCACCCAGGCCAGGATCCTGTG
CAGGAGTAGGGGGAGCTGCCTTGTTCTCCTCTTCCCGAGACCTCCCTGATGATGTCCTGACCTTCATCAA
GGCTCACCCGCTGCTGGACCCCGCTGTACCACCTGTCACCCATCAGCCTCTACTCACTCTCACTAGCAGG
GCCCTACTGACCCAAGTAGCTGTGGATGGCATGGCTGGTCCCCACAGTAACATCACAGTCATGTTCCTTG
GCTCCAATGATGGGACAGTGCTGAAGGTGCTGACCCCAGGTGGGCGATCCGGGGGACCTGAGCCCATCCT
CCTGGAAGAGATTGATGCCTACAGCCCTGCCCGGTGCAGTGGGAAGCGGACAGCCCAAACAGCACGACGG
ATCATAGGGCTGGAGCTGGACACTGAGGGTCACAGGCTTTTTGTGGCTTTTTCTGGCTGTATTGTCTACC
TCCCTCTCAGCCGGTGTGCCCGGCATGGGGCCTGTCAGAGGAGCTGTTTGGCTTCTCAGGACCCATACTG
TGGATGGCATAGCTCCAGGGGCTGTGTGGATATCAGGGGATCTGGTGGGACTGATGTGGATCAGGCTGGG
AACCAGGAATCCATGGAGCATGGTGACTGCCAAGATGGAGCTACTGGGAGTCAGTCTGGCCCTGGGGATT
CTGCTTATGGCGTGCGCCGGGACCTGCCCCCAGCCTCGGCCTCCCGCTCCGTCCCCATCCCACTCCTCCT
GGCCAGTGTGGCCGCAGCTTTTGCCCTGGGCGCCTCAGTCTCTGGCCTCCTGGTCTCCTGTGCTTGTCGC
CGCGCCCACCGACGTCGGGGCAAGGACATCGAGACTCCGGGGCTCCCGCGCCCTCTCTCCCTCCGCAGTT
TGGCCCGGCTCCACGGTGGGGGCCCAGAGCCCCCGCCGCCCTCCAAGGACGGGGACGCGGTGCAGACGCC
GCAGCTCTACACCACCTTCCTGCCGCCTCCGGAGGGCGTGCCCCCGCCGGAGCTGGCCTGCCTGCCCACC
CCCGAGTCCACGCCGGAGCTGCCGGTCAAGCACCTCCGCGCCGCCGGGGACCCCTGGGAGTGGAACCAGA
ACAGGAACAACGCCAAGGAGGGTCCGGGCCGCTCACGGGGCGGGCACGCGGCGGGCGGGCCCGCGCCCCG
CGTGCTGGTGAGGCCACCGCCGCCCGGCTGTCCCGGGCAGGCCGTGGAAGTCACCACCCTGGAGGAACTG
CTGCGCTACCTGCACGGCCCGCAGCCGCCCAGAAAGGGGGCCGAGCCCCCCGCCCCTTTAACCTCGCGGG
CGCTCCCGCCGGAGCCCGCCCCCGCCCTCTTGGGCGGCCCCAGCCCCAGGCCCCACGAGTGCGCCTCGCC
GCTGAGGCTGGACGTGCCCCCCGAGGGCAGGTGCGCCTCTGCCCCCGCCCGGCCCGCGCTCTCCGCCCCC
GCTCCCCGGCTGGGCGTCGGCGGAGGCCGGAGGTTGCCTTTCTCCGGCCACCGGGCCCCCCCTGCCCTGC
TCACTCGAGTCCCCTCGGGAGGTCCCTCCAGGTACTCCGGGGGTCCCGGGAAGCACCTCCTGTACCTGGG
CCGGCCCGAGGGCTACCGGGGCCGCGCCCTGAAAAGGGTGGACGTCGAGAAGCCCCAGTTGTCCCTGAAG
CCTCCCCTCGTCGGGCCCTCCTCCCGCCAGGCCGTCCCGAACGGCGGCCGTTTCAACTTTTAA

Translation (930 aa):
MPRAPHFMPLLLLLLLLSLPHTQAAFPQDPLPLLISDLQGTSPLSWFRGLEDDAVAAELGLDFQRFLTLN
RTLLVAARDHVFSFDLQAEEEGEGLVPNKYLTWRSQDVENCAVRGKLTDECYNYIRVLVPWDSQTLLACG
TNSFSPVCRSYGITSLQQEGEELSGQARCPFDATQSNVAIFAEGSLYSATAADFQASDAVVYRSLGPQPP
LRSAKYDSKWLREPHFVQALEHGDHVYFFFREVSVEDARLGRVQFSRVARVCKRDMGGSPRALDRHWTSF
LKLRLNCSVPGDSTFYFDVLQALTGPVNLHGRSALFGVFTTQTNSIPGSAVCAFYLDEIERGFEGKFKEQ
RSLDGAWTPVSEDRVPSPRPGSCAGVGGAALFSSSRDLPDDVLTFIKAHPLLDPAVPPVTHQPLLTLTSR
ALLTQVAVDGMAGPHSNITVMFLGSNDGTVLKVLTPGGRSGGPEPILLEEIDAYSPARCSGKRTAQTARR
IIGLELDTEGHRLFVAFSGCIVYLPLSRCARHGACQRSCLASQDPYCGWHSSRGCVDIRGSGGTDVDQAG
NQESMEHGDCQDGATGSQSGPGDSAYGVRRDLPPASASRSVPIPLLLASVAAAFALGASVSGLLVSCACR
RAHRRRGKDIETPGLPRPLSLRSLARLHGGGPEPPPPSKDGDAVQTPQLYTTFLPPPEGVPPPELACLPT
PESTPELPVKHLRAAGDPWEWNQNRNNAKEGPGRSRGGHAAGGPAPRVLVRPPPPGCPGQAVEVTTLEEL
LRYLHGPQPPRKGAEPPAPLTSRALPPEPAPALLGGPSPRPHECASPLRLDVPPEGRCASAPARPALSAP
APRLGVGGGRRLPFSGHRAPPALLTRVPSGGPSRYSGGPGKHLLYLGRPEGYRGRALKRVDVEKPQLSLK
PPLVGPSSRQAVPNGGRFNF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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