CCDS
Home
FTP
Process
Releases & Statistics
Collaborators
EBI
HGNC
MGI
NCBI
Contact Us
email CCDS
Genome Displays Related Resources
Gene
HomoloGene
MANE
RefSeq
|
![](/corehtml/transparent.gif) |
Report for CCDS9759.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
9759.1 |
Public |
Homo sapiens |
14 |
WDR89 |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:112840](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:9759.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:112840](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 14 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23
Review status: Reviewed (by RefSeq and Havana)
Attributes |
CDS uses downstream AUG |
Sequence IDs included in CCDS 9759.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000267522.7 |
ENSP00000267522.3 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000267522.7](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000267522.3](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000267522](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000267522](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000394942.2 |
ENSP00000378399.2 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000394942.2](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000378399.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000394942](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000378399](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000620954.2 |
ENSP00000480112.1 |
MANE Select |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000620954.2](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000480112.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000620954](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000480112](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001008726.3 |
NP_001008726.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001008726.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001008726.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001008726](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001008726](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001008726.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001258272.2 |
NP_001245201.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001258272.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001245201.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001258272](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001245201](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001245201.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001382423.1 |
NP_001369352.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001382423.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001369352.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001382423](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001369352](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001369352.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001382424.1 |
NP_001369353.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001382424.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001369353.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001382424](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001369353](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001369353.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001382425.1 |
NP_001369354.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001382425.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001369354.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001382425](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001369354](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001369354.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001382426.1 |
NP_001369355.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001382426.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001369355.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001382426](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001369355](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001369355.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001382427.1 |
NP_001369356.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001382427.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001369356.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001382427](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001369356](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001369356.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001382428.1 |
NP_001369357.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001382428.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001369357.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001382428](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001369357](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001369357.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001382429.1 |
NP_001369358.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001382429.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001369358.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001382429](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001369358](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001369358.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_080666.4 |
NP_542397.1 |
MANE Select |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_080666.4](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_542397.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_080666](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_542397](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_542397.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 9759.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (1164 nt): ATGGAAAAGATTGAGGAACAATTTGCTAATCTGCACATTGTTAAATGTTCCTTAGGAACCAAAGAGCCCA CTTACCTTCTTGGTATAGACACATCAAAGACTGTCCAAGCAGGAAAGGAAAACTTGGTTGCTGTTTTATG TTCTAATGGATCAATCAGAATATATGATAAAGAAAGGTTAAATGTACTACGAGAATTTAGTGGATATCCT GGACTTCTTAATGGAGTCAGATTTGCAAATTCCTGTGACAGTGTATATTCAGCATGTACTGATGGCACTG TGAAATGCTGGGATGCTCGAGTAGCCAGAGAAAAACCTGTTCAGCTCTTCAAGGGTTACCCTTCCAATAT TTTTATCAGTTTTGATATTAATTGTAATGATCATATTATTTGTGCTGGTACAGAAAAAGTTGATGATGAT GCATTGTTGGTGTTTTGGGATGCAAGGATGAATTCTCAGAATTTATCTACAACTAAAGACTCACTTGGTG CATATTCAGAGACACATAGTGATGATGTCACTCAAGTACGTTTCCATCCCAGCAATCCCAACATGGTAGT CTCAGGTTCATCTGATGGCCTGGTAAATGTATTTGATATTAATATTGATAATGAGGAGGATGCACTGGTT ACAACCTGTAACTCAATTTCATCAGTAAGCTGTATTGGTTGGTCTGGGAAAGGTTATAAACAGATTTACT GCATGACACATGATGAAGGATTTTATTGGTGGGATCTTAATCATCTGGACACTGATGAACCAGTTACACG TTTGAACATCCAGGATGTCAGAGAAGTAGTTAACATGAAAGAAGATGCTTTGGACTATTTGATTGGTGGC CTATATCATGAAAAGACAGACACATTGCATGTTATTGGAGGAACAAACAAAGGAAGGATTCATTTGATGA ACTGCAGCATGTCAGGACTGACCCATGTGACTAGCCTTCAGGGAGGGCATGCTGCTACAGTCCGTTCTTT CTGTTGGAATGTGCAAGATGATTCTTTGTTGACTGGAGGAGAAGATGCACAGTTGTTACTTTGGAAACCT GGAGCTATAGAGAAGACCTTTACAAAGAAAGAGAGTATGAAAATAGCATCCTCTGTGCACCAACGAGTAC GAGTTCATAGTAATGATTCTTATAAAAGAAGGAAAAAGCAGTGA
Translation (387 aa): MEKIEEQFANLHIVKCSLGTKEPTYLLGIDTSKTVQAGKENLVAVLCSNGSIRIYDKERLNVLREFSGYP GLLNGVRFANSCDSVYSACTDGTVKCWDARVAREKPVQLFKGYPSNIFISFDINCNDHIICAGTEKVDDD ALLVFWDARMNSQNLSTTKDSLGAYSETHSDDVTQVRFHPSNPNMVVSGSSDGLVNVFDINIDNEEDALV TTCNSISSVSCIGWSGKGYKQIYCMTHDEGFYWWDLNHLDTDEPVTRLNIQDVREVVNMKEDALDYLIGG LYHEKTDTLHVIGGTNKGRIHLMNCSMSGLTHVTSLQGGHAATVRSFCWNVQDDSLLTGGEDAQLLLWKP GAIEKTFTKKESMKIASSVHQRVRVHSNDSYKRRKKQ
|