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Report for CCDS9732.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9732.1 Public Homo sapiens 14 ARID4A 24 110 108 CCDS HistoryNCBI Gene:5926Re-query CCDS DB by CCDS ID:9732.1Re-query CCDS DB by GeneID:5926See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9732.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000355431.8 ENSP00000347602.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000355431.8Link to Ensembl Protein Viewer:ENSP00000347602.3Re-query CCDS DB by Nucleotide ID:ENST00000355431Re-query CCDS DB by Protein ID:ENSP00000347602
Original member Current member NCBI NM_002892.4 NP_002883.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002892.4Link to Protein Sequence:NP_002883.3Re-query CCDS DB by Nucleotide ID:NM_002892Re-query CCDS DB by Protein ID:NP_002883Link to BLAST:NP_002883.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002883.3 1257 P29374-1 1257 100% 0 0

Chromosomal Locations for CCDS 9732.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 58299855 58299860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 58301580 58301690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 58304944 58305009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 58306022 58306112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 58318542 58318621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 58318711 58318805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 58323485 58323617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 58328237 58328316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 58329528 58329604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 58330003 58330169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 58344695 58344767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 58346411 58346505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 58347020 58347117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 58347647 58347878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 58351073 58351323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 58353658 58353855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 58359132 58359216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 58360901 58361042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 58364170 58365300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 58365518 58365622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 58366024 58366230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 58366883 58367029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 58371886 58371989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3774 nt):
ATGAAGGCGGCAGATGAGCCTGCCTACCTGACAGTGGGAACCGATGTCAGTGCCAAGTACCGAGGTGCCT
TCTGTGAGGCAAAGATTAAGACTGTGAAAAGGCTGGTGAAAGTTAAGGTACTCCTGAAACAGGATAATAC
CACACAATTGGTACAAGATGACCAAGTAAAGGGTCCTTTAAGAGTTGGAGCTATTGTTGAAACAAGGACA
TCTGATGGATCTTTTCAGGAAGCTATTATCAGCAAGTTGACAGATGCTAGTTGGTATACCGTGGTGTTTG
ATGATGGTGATGAGCGAACATTGAGACGTACCTCACTTTGTCTGAAAGGAGAGAGACATTTTGCAGAGAG
TGAGACACTTGACCAGCTTCCATTAACAAATCCAGAGCATTTTGGAACTCCAGTAATTGCAAAGAAGACG
AACAGAGGAAGGAGATCTTCTCTTCCTGTTACTGAAGATGAAAAGGAAGAAGAAAGCAGTGAAGAGGAAG
ATGAAGACAAGCGCCGTCTCAATGATGAATTACTAGGAAAAGTTGTAAGTGTGGTGTCTGCAACGGAGAG
GACTGAATGGTATCCTGCTTTGGTAATATCTCCCAGCTGTAATGATGACATCACAGTGAAAAAGGATCAG
TGTTTAGTTCGATCATTTATTGATTCTAAATTTTACTCTATAGCAAGAAAGGACATTAAGGAAGTAGACA
TTCTCAATCTACCGGAATCTGAGCTCTCCACTAAACCAGGGCTTCAGAAAGCAAGCATCTTCTTAAAAAC
TAGAGTTGTTCCTGATAATTGGAAAATGGATATAAGTGAAATCCTTGAGTCATCCAGTAGTGATGATGAA
GATGGCCCAGCTGAAGAAAATGATGAAGAGAAGGAAAAGGAGGCCAAAAAGACAGAAGAAGAGGTGCCTG
AGGAAGAACTTGATCCTGAAGAGAGGGACAACTTCCTCCAGCAGCTTTATAAGTTTATGGAAGACAGAGG
TACTCCAATCAACAAACCACCTGTTTTGGGCTATAAAGATCTCAATCTCTTCAAACTCTTCAGACTGGTT
TATCATCAGGGTGGATGTGACAATATTGATAGTGGTGCTGTATGGAAGCAAATTTATATGGACCTTGGCA
TTCCTATTTTGAATTCAGCTGCTTCCTACAATGTAAAAACTGCTTATAGAAAGTATCTCTATGGTTTTGA
GGAGTACTGCCGTTCGGCAAATATTCAGTTCAGAACTGTTCATCACCATGAACCAAAAGTAAAAGAGGAA
AAAAAAGACTTAGAAGAATCAATGGAAGAGGCTCTCAAATTAGATCAAGAAATGCCTTTAACAGAAGTGA
AGAGTGAACCTGAGGAAAATATCGATTCAAACAGTGAAAGTGAAAGAGAAGAGATAGAATTAAAATCTCC
GAGGGGACGAAGGAGAATTGCTCGAGATGTAAATTCTATTAAAAAGGAAATTGAAGAAGAGAAAACAGAA
GACAAATTAAAAGATAATGATACAGAAAATAAGGATGTAGATGATGACTATGAAACTGCAGAGAAAAAAG
AAAATGAGCTACTACTGGGGAGAAAAAATACACCAAAGCAAAAAGAGAAGAAAATTAAAAAACAGGAGGA
TTCTGACAAAGACTCAGATGAAGAGGAAGAGAAAAGCCAAGAGAGGGAAGAAACTGAAAGCAAATGTGAC
TCTGAAGGAGAGGAAGATGAGGAAGACATGGAACCCTGCCTAACAGGAACCAAAGTGAAAGTAAAATATG
GACGAGGGAAGACTCAGAAAATTTATGAAGCCAGTATTAAAAGCACTGAAATTGATGACGGAGAAGTTTT
ATATTTGGTACATTACTATGGATGGAATGTCAGGTATGATGAGTGGGTGAAGGCTGACAGGATAATCTGG
CCTTTGGACAAAGGTGGACCAAAGAAAAAACAGAAGAAAAAAGCTAAAAATAAAGAAGATAGTGAAAAGG
ACGAAAAGAGAGATGAGGAGAGGCAGAAGTCAAAACGGGGACGACCTCCTTTAAAATCAACCCTCTCATC
AAACATGCCGTATGGCTTATCTAAGACAGCAAACAGTGAAGGAAAATCAGACTCTTGTTCATCTGATAGT
GAAACAGAAGATGCTTTAGAAAAGAATTTAATAAATGAAGAACTTTCTCTTAAAGATGAACTAGAAAAAA
ATGAAAATTTGAATGATGATAAGCTAGATGAAGAAAATCCAAAGATTTCTGCACATATATTAAAAGAAAA
TGATAGGACTCAAATGCAGCCTTTAGAAACCCTGAAGTTAGAAGTTGGAGAGAATGAACAAATAGTACAG
ATTTTTGGGAACAAAATGGAAAAAACAGAAGAAGTTAAGAAAGAAGCCGAAAAATCTCCAAAAGGAAAGG
GAAGACGAAGCAAGACAAAAGATCTTTCTTTAGAAATTATAAAGATTTCATCATTTGGCCAGAATGAAGC
AGGAAGTGAACCTCATATAGAAGCTCATAGTCTTGAATTGTCTTCATTAGACAATAAAAACTTTTCTTCT
GCTACAGAAGATGAAATTGACCAATGTGTGAAAGAAAAGAAGTTGAAACGGAAAATACTAGGACAATCAT
CGCCAGAGAAAAAAATAAGAATTGAGAATGGAATGGAAATGACAAATACTGTATCTCAAGAAAGGACCAG
TGATTGTATTGGATCTGAGGGAATGAAAAACTTAAATTTTGAACAGCACTTTGAAAGAGAAAATGAAGGA
ATGCCATCATTGATAGCAGAGTCAAACCAATGCATCCAACAACTGACTAGTGAAAGATTTGATAGTCCAG
CTGAAGAAACTGTAAATATTCCACTAAAAGAAGATGAGGATGCAATGCCTCTGATCGGGCCTGAAACCTT
GGTTTGCCATGAAGTAGATTTGGATGATTTGGATGAAAAGGATAAGACCAGCATTGAGGATGTAGCAGTT
GAAAGCTCTGAGTCTAACTCTCTTGTTTCTATTCCACCTGCCCTACCTCCTGTAGTCCAACATAACTTTT
CAGTAGCTTCACCACTTACTCTTAGTCAAGATGAGTCTCGAAGCGTAAAAAGTGAGAGTGATATAACGAT
TGAAGTTGATAGTATTGCTGAAGAATCTCAAGAAGGTCTCTGTGAGAGGGAATCGGCAAATGGATTTGAA
ACTAATGTTGCCTCTGGTACCTGTAGTATAATTGTACAAGAGAGAGAGAGCAGAGAGAAGGGTCAGAAGA
GGCCAAGTGATGGAAATAGTGGATTAATGGCAAAAAAGCAAAAGCGTACCCCAAAGCGAACAAGTGCTGC
AGCCAAAAATGAAAAGAATGGAACAGGACAAAGCAGTGATAGTGAAGATCTTCCTGTCCTAGACAATTCA
AGTAAATGTACCCCAGTAAAGCATCTTAATGTATCTAAGCCACAGAAACTTGCACGATCTCCTGCAAGAA
TATCCCCGCACATCAAAGATGGAGAGAAAGATAAACACAGAGAAAAACATCCGAATTCATCCCCTAGGAC
ATATAAATGGAGCTTTCAGCTCAATGAATTAGATAATATGAACAGTACAGAGAGAATCTCATTTCTCCAA
GAAAAACTACAGGAAATCAGAAAATATTATATGTCTTTGAAGTCTGAAGTTGCAACCATAGACAGGAGGA
GAAAAAGATTAAAAAAGAAAGACAGGGAAGTGTCTCATGCGGGAGCCTCCATGTCATCTGCTTCATCAGA
CACTGGAATGAGTCCCTCATCATCATCTCCCCCACAAAATGTACTTGCTGTAGAATGCAGGTGA

Translation (1257 aa):
MKAADEPAYLTVGTDVSAKYRGAFCEAKIKTVKRLVKVKVLLKQDNTTQLVQDDQVKGPLRVGAIVETRT
SDGSFQEAIISKLTDASWYTVVFDDGDERTLRRTSLCLKGERHFAESETLDQLPLTNPEHFGTPVIAKKT
NRGRRSSLPVTEDEKEEESSEEEDEDKRRLNDELLGKVVSVVSATERTEWYPALVISPSCNDDITVKKDQ
CLVRSFIDSKFYSIARKDIKEVDILNLPESELSTKPGLQKASIFLKTRVVPDNWKMDISEILESSSSDDE
DGPAEENDEEKEKEAKKTEEEVPEEELDPEERDNFLQQLYKFMEDRGTPINKPPVLGYKDLNLFKLFRLV
YHQGGCDNIDSGAVWKQIYMDLGIPILNSAASYNVKTAYRKYLYGFEEYCRSANIQFRTVHHHEPKVKEE
KKDLEESMEEALKLDQEMPLTEVKSEPEENIDSNSESEREEIELKSPRGRRRIARDVNSIKKEIEEEKTE
DKLKDNDTENKDVDDDYETAEKKENELLLGRKNTPKQKEKKIKKQEDSDKDSDEEEEKSQEREETESKCD
SEGEEDEEDMEPCLTGTKVKVKYGRGKTQKIYEASIKSTEIDDGEVLYLVHYYGWNVRYDEWVKADRIIW
PLDKGGPKKKQKKKAKNKEDSEKDEKRDEERQKSKRGRPPLKSTLSSNMPYGLSKTANSEGKSDSCSSDS
ETEDALEKNLINEELSLKDELEKNENLNDDKLDEENPKISAHILKENDRTQMQPLETLKLEVGENEQIVQ
IFGNKMEKTEEVKKEAEKSPKGKGRRSKTKDLSLEIIKISSFGQNEAGSEPHIEAHSLELSSLDNKNFSS
ATEDEIDQCVKEKKLKRKILGQSSPEKKIRIENGMEMTNTVSQERTSDCIGSEGMKNLNFEQHFERENEG
MPSLIAESNQCIQQLTSERFDSPAEETVNIPLKEDEDAMPLIGPETLVCHEVDLDDLDEKDKTSIEDVAV
ESSESNSLVSIPPALPPVVQHNFSVASPLTLSQDESRSVKSESDITIEVDSIAEESQEGLCERESANGFE
TNVASGTCSIIVQERESREKGQKRPSDGNSGLMAKKQKRTPKRTSAAAKNEKNGTGQSSDSEDLPVLDNS
SKCTPVKHLNVSKPQKLARSPARISPHIKDGEKDKHREKHPNSSPRTYKWSFQLNELDNMNSTERISFLQ
EKLQEIRKYYMSLKSEVATIDRRRKRLKKKDREVSHAGASMSSASSDTGMSPSSSSPPQNVLAVECR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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