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Report for CCDS9728.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9728.1 Public Homo sapiens 14 OTX2 24 110 108 CCDS HistoryNCBI Gene:5015Re-query CCDS DB by CCDS ID:9728.1Re-query CCDS DB by GeneID:5015See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9728.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000554845.2 ENSP00000451357.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000554845.2Link to Ensembl Protein Viewer:ENSP00000451357.2Re-query CCDS DB by Nucleotide ID:ENST00000554845Re-query CCDS DB by Protein ID:ENSP00000451357
Original member Current member EBI ENST00000672264.2 ENSP00000500115.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000672264.2Link to Ensembl Protein Viewer:ENSP00000500115.1Re-query CCDS DB by Nucleotide ID:ENST00000672264Re-query CCDS DB by Protein ID:ENSP00000500115
Original member Current member EBI ENST00000673481.1 ENSP00000500595.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000673481.1Link to Ensembl Protein Viewer:ENSP00000500595.1Re-query CCDS DB by Nucleotide ID:ENST00000673481Re-query CCDS DB by Protein ID:ENSP00000500595
Original member Current member NCBI NM_001270525.2 NP_001257454.1 Accepted alive Link to Nucleotide Sequence:NM_001270525.2Link to Protein Sequence:NP_001257454.1Re-query CCDS DB by Nucleotide ID:NM_001270525Re-query CCDS DB by Protein ID:NP_001257454Link to BLAST:NP_001257454.1
Original member Current member NCBI NM_021728.4 NP_068374.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_021728.4Link to Protein Sequence:NP_068374.1Re-query CCDS DB by Nucleotide ID:NM_021728Re-query CCDS DB by Protein ID:NP_068374Link to BLAST:NP_068374.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001257454.1 297 P32243-2 297 100% 0 0
NP_068374.1 297 P32243-2 297 100% 0 0

Chromosomal Locations for CCDS 9728.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 56801735 56802355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56804188 56804363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56805360 56805456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (894 nt):
ATGATGTCTTATCTTAAGCAACCGCCTTACGCAGTCAATGGGCTGAGTCTGACCACTTCGGGTATGGACT
TGCTGCACCCCTCCGTGGGCTACCCGGGGCCCTGGGCTTCTTGTCCCGCAGCCACCCCCCGGAAACAGCG
CCGGGAGAGGACGACGTTCACTCGGGCGCAGCTAGATGTGCTGGAAGCACTGTTTGCCAAGACCCGGTAC
CCAGACATCTTCATGCGAGAGGAGGTGGCACTGAAAATCAACTTGCCCGAGTCGAGGGTGCAGGTATGGT
TTAAGAATCGAAGAGCTAAGTGCCGCCAACAACAGCAACAACAGCAGAATGGAGGTCAAAACAAAGTGAG
ACCTGCCAAAAAGAAGACATCTCCAGCTCGGGAAGTGAGTTCAGAGAGTGGAACAAGTGGCCAATTCACT
CCCCCCTCTAGCACCTCAGTCCCGACCATTGCCAGCAGCAGTGCTCCTGTGTCTATCTGGAGCCCAGCTT
CCATCTCCCCACTGTCAGATCCCTTGTCCACCTCCTCTTCCTGCATGCAGAGGTCCTATCCCATGACCTA
TACTCAGGCTTCAGGTTATAGTCAAGGATATGCTGGCTCAACTTCCTACTTTGGGGGCATGGACTGTGGA
TCATATTTGACCCCTATGCATCACCAGCTTCCCGGACCAGGGGCCACACTCAGTCCCATGGGTACCAATG
CAGTCACCAGCCATCTCAATCAGTCCCCAGCTTCTCTTTCCACCCAGGGATATGGAGCTTCAAGCTTGGG
TTTTAACTCAACCACTGATTGCTTGGATTATAAGGACCAAACTGCCTCCTGGAAGCTTAACTTCAATGCT
GACTGCTTGGATTATAAAGATCAGACATCCTCGTGGAAATTCCAGGTTTTGTGA

Translation (297 aa):
MMSYLKQPPYAVNGLSLTTSGMDLLHPSVGYPGPWASCPAATPRKQRRERTTFTRAQLDVLEALFAKTRY
PDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQQQQNGGQNKVRPAKKKTSPAREVSSESGTSGQFT
PPSSTSVPTIASSSAPVSIWSPASISPLSDPLSTSSSCMQRSYPMTYTQASGYSQGYAGSTSYFGGMDCG
SYLTPMHHQLPGPGATLSPMGTNAVTSHLNQSPASLSTQGYGASSLGFNSTTDCLDYKDQTASWKLNFNA
DCLDYKDQTSSWKFQVL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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