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Report for CCDS9639.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9639.1 Public Homo sapiens 14 SCFD1 24 110 108 CCDS HistoryNCBI Gene:23256Re-query CCDS DB by CCDS ID:9639.1Re-query CCDS DB by GeneID:23256See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9639.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000458591.7 ENSP00000390783.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000458591.7Link to Ensembl Protein Viewer:ENSP00000390783.2Re-query CCDS DB by Nucleotide ID:ENST00000458591Re-query CCDS DB by Protein ID:ENSP00000390783
Original member Current member NCBI NM_016106.4 NP_057190.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016106.4Link to Protein Sequence:NP_057190.2Re-query CCDS DB by Nucleotide ID:NM_016106Re-query CCDS DB by Protein ID:NP_057190Link to BLAST:NP_057190.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057190.2 642 Q8WVM8-1 642 100% 0 0

Chromosomal Locations for CCDS 9639.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 30622339 30622399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30628209 30628279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30630477 30630565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30633947 30634037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30638125 30638247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30639777 30639864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30643316 30643405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30649528 30649583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30650565 30650650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30653489 30653588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30670256 30670395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30673257 30673347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30673924 30673997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30674984 30675065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30694773 30694869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30700188 30700258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30702296 30702375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30705823 30705885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30707990 30708065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30715924 30715977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30719325 30719377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30721884 30721917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30722494 30722559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30734790 30734858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30735586 30735609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1929 nt):
ATGGCGGCGGCGGCGGCAGCGACAGCAGCAGCAGCAGCCAGTATTCGGGAAAGGCAGACAGTGGCTTTGA
AGCGTATGTTGAATTTCAATGTGCCTCATATTAAAAACAGCACAGGAGAACCAGTATGGAAGGTACTCAT
TTATGACAGATTTGGCCAAGATATAATCTCTCCTCTGCTATCTGTGAAGGAGCTAAGAGACATGGGAATC
ACTCTGCATCTGCTTTTACACTCTGATCGAGATCCTATTCCAGATGTTCCTGCAGTATACTTTGTAATGC
CAACTGAAGAAAATATTGACAGAATGTGCCAGGATCTTCGAAATCAACTATATGAATCATATTATTTAAA
TTTTATTTCTGCTATTTCAAGAAGTAAACTGGAAGATATTGCAAATGCAGCGTTAGCAGCTAGTGCAGTA
ACACAAGTAGCCAAGGTTTTTGACCAATATCTCAATTTTATTACTTTGGAAGATGATATGTTTGTATTAT
GTAATCAAAATAAGGAGCTTGTTTCATATCGTGCCATTAACAGGCCAGATATCACAGACACGGAAATGGA
AACTGTTATGGACACTATAGTTGACAGCCTCTTCTGCTTTTTTGTTACTCTGGGTGCTGTTCCTATAATC
AGATGTTCAAGAGGAACAGCAGCAGAAATGGTAGCAGTGAAACTAGACAAGAAACTTCGAGAAAATCTAA
GAGATGCAAGAAACAGTCTTTTTACAGGTGATACACTTGGAGCTGGCCAATTCAGCTTCCAGAGGCCCTT
ATTAGTCCTTGTTGACAGAAACATAGATTTGGCAACTCCTTTACATCATACTTGGACATATCAAGCATTG
GTGCACGATGTACTGGATTTCCATTTAAACAGGGTTAATTTGGAAGAATCTTCAGGAGTGGAAAACTCTC
CAGCTGGTGCTAGACCAAAGAGAAAAAACAAGAAGTCTTATGATTTAACTCCGGTTGATAAATTTTGGCA
AAAACATAAAGGAAGTCCATTCCCAGAAGTTGCAGAATCAGTTCAGCAAGAACTAGAATCTTACAGAGCA
CAGGAAGATGAGGTCAAACGACTTAAAAGCATTATGGGACTAGAAGGGGAAGATGAAGGAGCCATAAGTA
TGCTTTCTGACAATACCGCTAAGCTAACATCAGCTGTTAGTTCTTTGCCAGAACTCCTTGAGAAAAAAAG
ACTTATTGATCTCCATACAAATGTTGCCACTGCTGTTTTAGAACATATAAAGGCAAGAAAATTGGATGTA
TATTTTGAATATGAAGAAAAAATAATGAGCAAAACTACTCTGGATAAATCTCTTCTAGATATAATATCAG
ACCCTGATGCAGGAACTCCAGAAGATAAAATGAGGTTGTTTCTTATCTATTATATAAGCACACAGCAAGC
ACCTTCTGAGGCTGATTTGGAGCAATATAAAAAAGCTTTAACTGATGCAGGATGCAACCTTAATCCTTTA
CAATATATCAAACAGTGGAAGGCTTTTACCAAGATGGCCTCAGCTCCGGCCAGCTATGGCAGCACTACCA
CTAAACCAATGGGTCTTTTATCACGAGTCATGAATACAGGATCACAGTTTGTGATGGAAGGAGTGAAGAA
CCTGGTTTTGAAACAGCAAAATCTACCTGTTACTCGTATTTTGGACAATCTTATGGAGATGAAGTCAAAC
CCCGAAACTGATGACTATAGATATTTTGATCCCAAAATGCTGCGGGGCAATGACAGCTCAGTTCCCAGAA
ATAAAAATCCATTCCAAGAGGCCATTGTTTTTGTGGTGGGAGGAGGCAACTACATTGAATATCAGAATCT
TGTTGACTACATAAAGGGGAAACAAGGCAAACACATTTTATATGGCTGCAGTGAGCTTTTTAATGCTACA
CAGTTCATAAAACAGTTGTCACAACTTGGACAAAAGTAA

Translation (642 aa):
MAAAAAATAAAAASIRERQTVALKRMLNFNVPHIKNSTGEPVWKVLIYDRFGQDIISPLLSVKELRDMGI
TLHLLLHSDRDPIPDVPAVYFVMPTEENIDRMCQDLRNQLYESYYLNFISAISRSKLEDIANAALAASAV
TQVAKVFDQYLNFITLEDDMFVLCNQNKELVSYRAINRPDITDTEMETVMDTIVDSLFCFFVTLGAVPII
RCSRGTAAEMVAVKLDKKLRENLRDARNSLFTGDTLGAGQFSFQRPLLVLVDRNIDLATPLHHTWTYQAL
VHDVLDFHLNRVNLEESSGVENSPAGARPKRKNKKSYDLTPVDKFWQKHKGSPFPEVAESVQQELESYRA
QEDEVKRLKSIMGLEGEDEGAISMLSDNTAKLTSAVSSLPELLEKKRLIDLHTNVATAVLEHIKARKLDV
YFEYEEKIMSKTTLDKSLLDIISDPDAGTPEDKMRLFLIYYISTQQAPSEADLEQYKKALTDAGCNLNPL
QYIKQWKAFTKMASAPASYGSTTTKPMGLLSRVMNTGSQFVMEGVKNLVLKQQNLPVTRILDNLMEMKSN
PETDDYRYFDPKMLRGNDSSVPRNKNPFQEAIVFVVGGGNYIEYQNLVDYIKGKQGKHILYGCSELFNAT
QFIKQLSQLGQK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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