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Report for CCDS9596.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9596.1 Public Homo sapiens 14 EFS 24 110 108 CCDS HistoryNCBI Gene:10278Re-query CCDS DB by CCDS ID:9596.1Re-query CCDS DB by GeneID:10278See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9596.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000351354.3 ENSP00000340607.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000351354.3Link to Ensembl Protein Viewer:ENSP00000340607.3Re-query CCDS DB by Nucleotide ID:ENST00000351354Re-query CCDS DB by Protein ID:ENSP00000340607
Original member Current member NCBI NM_032459.3 NP_115835.1 Accepted alive Link to Nucleotide Sequence:NM_032459.3Link to Protein Sequence:NP_115835.1Re-query CCDS DB by Nucleotide ID:NM_032459Re-query CCDS DB by Protein ID:NP_115835Link to BLAST:NP_115835.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_115835.1 468 O43281-2 468 100% 0 0

Chromosomal Locations for CCDS 9596.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 23357226 23357660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 23358876 23358965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 23359317 23360039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 23360141 23360281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 23365008 23365025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1407 nt):
ATGGCCATTGCCACGTCGGTGTATGTGGTGCCGCCCCCAGCTCGGCCCTGTCCAACCTCAGGACCTCCAG
CTGGACCTTGCCCACCCTCTCCTGACCTCATCTACAAAATCCCCAGAGCTAGTGGGACCCAGCTGGCTGC
TCCCAGAGATGCCTTGGAGGTCTACGATGTGCCCCCCACCGCCCTCCGGGTGCCCTCCAGTGGCCCCTAT
GACTGCCCTGCCTCCTTTTCCCACCCTCTGACCCGGGTTGCCCCGCAGCCCCCTGGAGAGGATGATGCTC
CCTATGATGTGCCTCTGACCCCAAAGCCACCTGCAGAGCTGGAACCAGATCTGGAGTGGGAAGGAGGCCG
GGAGCCGGGGCCCCCCATCTATGCTGCCCCCTCCAACCTGAAACGAGCGTCAGCCTTACTCAATTTGTAT
GAAGCACCCGAGGAACTGCTGGCAGACGGGGAGGGCGGGGGCACTGATGAGGGGATCTACGATGTGCCTC
TGCTGGGGCCAGAGGCTCCCCCTTCTCCAGAGCCCCCTGGAGCCTTGGCCTCCCATGACCAGGACACCCT
GGCCCAGCTTCTGGCCAGAAGCCCCCCACCCCCACACAGGCCCCGGCTCCCCTCAGCTGAGAGCCTGTCC
CGCCGCCCTCTGCCTGCCCTGCCTGTCCCTGAGGCCCCCAGCCCCTCCCCAGTGCCCTCTCCTGCCCCAG
GCCGGAAGGGCAGCATCCAGGACCGGCCTCTGCCCCCACCCCCACCCCGCCTGCCTGGTTATGGAGGCCC
CAAGGTCGAGGGGGATCCAGAGGGCAGGGAGATGGAGGATGACCCAGCAGGACACCACAATGAGTACGAG
GGCATTCCGATGGCCGAGGAGTATGACTATGTCCACCTGAAGGGCATGGACAAAGCTCAGGGATCTAGGC
CCCCGGATCAGGCCTGCACAGGGGATCCTGAACTGCCCGAGAGGGGGATGCCGGCGCCGCAGGAGGCCCT
GTCCCCAGGGGAGCCACTGGTTGTGTCCACCGGAGATCTGCAGCTCCTGTACTTCTATGCTGGGCAATGC
CAGAGCCACTACTCAGCCCTGCAGGCAGCCGTGGCAGCCCTGATGTCCAGTACCCAGGCTAATCAGCCCC
CGCGCCTTTTCGTGCCCCACAGCAAGAGGGTGGTGGTGGCTGCTCATCGCCTGGTGTTTGTTGGGGACAC
CCTGGGCCGGCTGGCAGCCTCTGCCCCTCTGAGAGCACAGGTCAGGGCTGCAGGTACAGCACTGGGCCAG
GCATTGCGGGCCACTGTGCTGGCTGTCAAGGGAGCTGCCCTGGGCTACCCATCCAGCCCTGCCATCCAAG
AGATGGTGCAGTGTGTAACAGAACTGGCAGGGCAGGCCCTGCAATTCACTACCCTGCTCACTAGCCTGGC
TCCATGA

Translation (468 aa):
MAIATSVYVVPPPARPCPTSGPPAGPCPPSPDLIYKIPRASGTQLAAPRDALEVYDVPPTALRVPSSGPY
DCPASFSHPLTRVAPQPPGEDDAPYDVPLTPKPPAELEPDLEWEGGREPGPPIYAAPSNLKRASALLNLY
EAPEELLADGEGGGTDEGIYDVPLLGPEAPPSPEPPGALASHDQDTLAQLLARSPPPPHRPRLPSAESLS
RRPLPALPVPEAPSPSPVPSPAPGRKGSIQDRPLPPPPPRLPGYGGPKVEGDPEGREMEDDPAGHHNEYE
GIPMAEEYDYVHLKGMDKAQGSRPPDQACTGDPELPERGMPAPQEALSPGEPLVVSTGDLQLLYFYAGQC
QSHYSALQAAVAALMSSTQANQPPRLFVPHSKRVVVAAHRLVFVGDTLGRLAASAPLRAQVRAAGTALGQ
ALRATVLAVKGAALGYPSSPAIQEMVQCVTELAGQALQFTTLLTSLAP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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