NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS9559.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9559.1 Public Homo sapiens 14 RNASE1 24 110 108 CCDS HistoryNCBI Gene:6035Re-query CCDS DB by CCDS ID:9559.1Re-query CCDS DB by GeneID:6035See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9559.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000340900.3 ENSP00000344193.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000340900.3Link to Ensembl Protein Viewer:ENSP00000344193.3Re-query CCDS DB by Nucleotide ID:ENST00000340900Re-query CCDS DB by Protein ID:ENSP00000344193
Original member Current member EBI ENST00000397967.5 ENSP00000381057.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000397967.5Link to Ensembl Protein Viewer:ENSP00000381057.4Re-query CCDS DB by Nucleotide ID:ENST00000397967Re-query CCDS DB by Protein ID:ENSP00000381057
Original member Current member EBI ENST00000397970.4 ENSP00000381060.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000397970.4Link to Ensembl Protein Viewer:ENSP00000381060.4Re-query CCDS DB by Nucleotide ID:ENST00000397970Re-query CCDS DB by Protein ID:ENSP00000381060
Original member Current member EBI ENST00000412779.2 ENSP00000399493.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000412779.2Link to Ensembl Protein Viewer:ENSP00000399493.2Re-query CCDS DB by Nucleotide ID:ENST00000412779Re-query CCDS DB by Protein ID:ENSP00000399493
Original member Current member NCBI NM_002933.5 NP_002924.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002933.5Link to Protein Sequence:NP_002924.1Re-query CCDS DB by Nucleotide ID:NM_002933Re-query CCDS DB by Protein ID:NP_002924Link to BLAST:NP_002924.1
Original member Current member NCBI NM_198232.3 NP_937875.1 Accepted alive Link to Nucleotide Sequence:NM_198232.3Link to Protein Sequence:NP_937875.1Re-query CCDS DB by Nucleotide ID:NM_198232Re-query CCDS DB by Protein ID:NP_937875Link to BLAST:NP_937875.1
Original member Current member NCBI NM_198234.3 NP_937877.1 Accepted alive Link to Nucleotide Sequence:NM_198234.3Link to Protein Sequence:NP_937877.1Re-query CCDS DB by Nucleotide ID:NM_198234Re-query CCDS DB by Protein ID:NP_937877Link to BLAST:NP_937877.1
Original member Current member NCBI NM_198235.3 NP_937878.1 Accepted alive Link to Nucleotide Sequence:NM_198235.3Link to Protein Sequence:NP_937878.1Re-query CCDS DB by Nucleotide ID:NM_198235Re-query CCDS DB by Protein ID:NP_937878Link to BLAST:NP_937878.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002924.1 156 P07998 156 100% 0 0
NP_937875.1 156 P07998 156 100% 0 0
NP_937877.1 156 P07998 156 100% 0 0
NP_937878.1 156 P07998 156 100% 0 0

Chromosomal Locations for CCDS 9559.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 20801598 20802068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (471 nt):
ATGGCTCTGGAGAAGTCTCTTGTCCGGCTCCTTCTGCTTGTCCTGATACTGCTGGTGCTGGGCTGGGTCC
AGCCTTCCCTGGGCAAGGAATCCCGGGCCAAGAAATTCCAGCGGCAGCATATGGACTCAGACAGTTCCCC
CAGCAGCAGCTCCACCTACTGTAACCAAATGATGAGGCGCCGGAATATGACACAGGGGCGGTGCAAACCA
GTGAACACCTTTGTGCACGAGCCCCTGGTAGATGTCCAGAATGTCTGTTTCCAGGAAAAGGTCACCTGCA
AGAACGGGCAGGGCAACTGCTACAAGAGCAACTCCAGCATGCACATCACAGACTGCCGCCTGACAAACGG
CTCCAGGTACCCCAACTGTGCATACCGGACCAGCCCGAAGGAGAGACACATCATTGTGGCCTGTGAAGGG
AGCCCATATGTGCCAGTCCACTTTGATGCTTCTGTGGAGGACTCTACCTAA

Translation (156 aa):
MALEKSLVRLLLLVLILLVLGWVQPSLGKESRAKKFQRQHMDSDSSPSSSSTYCNQMMRRRNMTQGRCKP
VNTFVHEPLVDVQNVCFQEKVTCKNGQGNCYKSNSSMHITDCRLTNGSRYPNCAYRTSPKERHIIVACEG
SPYVPVHFDASVEDST


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH