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Report for CCDS95.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
95.1 Public Homo sapiens 1 RERE 24 110 108 CCDS HistoryNCBI Gene:473Re-query CCDS DB by CCDS ID:95.1Re-query CCDS DB by GeneID:473See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 95.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000337907.7 ENSP00000338629.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000337907.7Link to Ensembl Protein Viewer:ENSP00000338629.3Re-query CCDS DB by Nucleotide ID:ENST00000337907Re-query CCDS DB by Protein ID:ENSP00000338629
Original member Current member EBI ENST00000400908.7 ENSP00000383700.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000400908.7Link to Ensembl Protein Viewer:ENSP00000383700.2Re-query CCDS DB by Nucleotide ID:ENST00000400908Re-query CCDS DB by Protein ID:ENSP00000383700
Original member Current member NCBI NM_001042681.2 NP_001036146.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001042681.2Link to Protein Sequence:NP_001036146.1Re-query CCDS DB by Nucleotide ID:NM_001042681Re-query CCDS DB by Protein ID:NP_001036146Link to BLAST:NP_001036146.1
Original member Current member NCBI NM_012102.4 NP_036234.3 Accepted alive Link to Nucleotide Sequence:NM_012102.4Link to Protein Sequence:NP_036234.3Re-query CCDS DB by Nucleotide ID:NM_012102Re-query CCDS DB by Protein ID:NP_036234Link to BLAST:NP_036234.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001036146.1 1566 Q9P2R6-1 1566 100% 0 0
NP_036234.3 1566 Q9P2R6-1 1566 100% 0 0

Chromosomal Locations for CCDS 95.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 8355087 8355120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 8355419 8355599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 8356100 8356246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 8358196 8358916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 8359764 8359986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 8360112 8361490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 8361763 8361876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 8362683 8362844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 8364056 8364255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 8364746 8364838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 8365812 8365974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 8422727 8422807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 8465925 8466023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 8495063 8495162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 8497405 8497529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 8508627 8508675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 8541214 8541318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 8556475 8556571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 8557418 8557523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 8614561 8614686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 8624310 8624380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 8655973 8656297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4701 nt):
ATGACAGCGGACAAAGACAAAGACAAAGACAAAGAGAAGGACCGGGACCGAGACCGGGACCGAGAGAGAG
AGAAAAGAGACAAAGCAAGAGAGAGTGAGAATTCAAGGCCACGCCGGAGCTGTACCTTGGAAGGAGGAGC
CAAAAATTATGCTGAGAGTGATCACAGTGAAGACGAGGACAATGACAACAATAGTGCCACCGCAGAGGAG
TCCACGAAGAAGAATAAGAAGAAACCACCGAAAAAAAAGTCTCGTTATGAAAGGACAGATACCGGTGAGA
TAACATCCTACATCACTGAAGATGATGTGGTCTACAGACCAGGAGACTGTGTGTATATCGAGAGTCGGAG
GCCAAACACACCGTATTTCATCTGTAGCATTCAAGACTTCAAACTGGTCCACAACTCCCAGGCCTGTTGC
AGATCTCCAACTCCTGCTTTGTGTGACCCCCCAGCATGCTCTCTGCCGGTGGCATCACAGCCACCACAGC
ATCTTTCTGAAGCCGGGAGAGGGCCTGTAGGGAGTAAGAGGGACCATCTCCTCATGAACGTCAAATGGTA
CTACCGTCAATCTGAGGTTCCAGATTCTGTGTATCAGCATTTGGTTCAGGATCGACATAATGAAAATGAC
TCTGGAAGAGAACTTGTCATTACAGACCCAGTTATCAAGAACCGAGAGCTCTTCATTTCTGATTACGTTG
ACACTTACCATGCTGCTGCCCTTAGAGGGAAGTGTAACATCTCCCATTTTTCTGACATATTTGCTGCTAG
AGAGTTTAAAGCCCGAGTGGATTCATTTTTCTACATATTAGGATATAACCCTGAGACAAGGAGGCTGAAC
AGTACCCAGGGGGAGATTCGTGTCGGTCCTAGTCATCAGGCCAAACTTCCAGATCTGCAACCATTTCCTT
CTCCAGATGGTGATACAGTGACCCAACATGAGGAACTGGTCTGGATGCCTGGAGTTAACGACTGTGACCT
CCTTATGTACTTGAGGGCAGCAAGGAGCATGGCGGCATTTGCAGGAATGTGTGATGGAGGCTCTACAGAG
GACGGCTGTGTCGCAGCCTCTCGGGATGACACCACTCTGAATGCACTGAACACACTGCATGAAAGCGGTT
ACGATGCTGGCAAAGCCCTGCAGCGCCTGGTGAAGAAGCCTGTGCCCAAGCTCATCGAGAAGTGCTGGAC
CGAGGACGAAGTGAAACGCTTCGTTAAGGGACTCAGGCAGTACGGGAAGAACTTCTTCAGAATTAGAAAG
GAGCTGCTTCCCAATAAGGAAACAGGGGAGCTGATCACCTTCTATTACTATTGGAAGAAGACCCCCGAAG
CAGCCAGCTCCCGAGCCCATCGTAGGCACCGCAGGCAGGCCGTGTTCAGGAGGATTAAGACTCGCACCGC
GTCCACACCCGTCAACACACCCTCCAGACCCCCGTCCAGTGAATTCTTGGACCTAAGTTCAGCCAGTGAA
GATGACTTCGACAGTGAGGACAGTGAGCAGGAGCTGAAGGGGTACGCCTGCCGCCACTGCTTCACCACCA
CCTCCAAAGATTGGCACCACGGAGGCCGGGAGAACATCCTGCTTTGCACCGACTGTCGCATCCACTTCAA
GAAATACGGTGAGCTCCCGCCCATTGAGAAGCCCGTGGACCCGCCACCGTTTATGTTCAAACCCGTCAAG
GAAGAGGATGATGGGCTCAGTGGGAAGCATAGCATGAGGACACGGCGGAGTCGGGGCTCGATGTCGACAC
TACGCAGTGGTCGGAAGAAGCAGCCAGCCAGCCCTGATGGTCGCACCTCACCCATCAATGAAGACATCCG
CTCCAGCGGCCGGAACTCCCCCAGCGCTGCCAGTACCTCCAGCAATGACAGTAAAGCAGAGACAGTGAAG
AAGTCGGCCAAGAAGGTGAAGGAGGAAGCCTCTTCCCCTCTTAAGAGTAACAAACGCCAGCGGGAGAAGG
TGGCCTCTGATACGGAGGAGGCTGACAGGACCAGCTCCAAGAAGACAAAAACGCAGGAGATCAGCAGGCC
CAACTCGCCATCTGAAGGTGAGGGAGAGAGTTCAGACAGTCGCAGCGTCAACGATGAGGGTAGCAGTGAC
CCCAAAGACATCGACCAGGACAATCGCAGCACGTCCCCGAGCATCCCCAGCCCCCAGGACAATGAGAGTG
ACTCGGACTCGTCAGCCCAGCAGCAGATGCTGCAGGCCCAGCCCCCAGCCTTGCAGGCTCCCACTGGGGT
CACCCCAGCTCCCTCCTCAGCTCCTCCAGGGACCCCTCAGCTGCCCACGCCAGGGCCCACGCCCTCTGCC
ACTGCAGTTCCCCCACAGGGCTCCCCCACGGCCTCCCAGGCCCCTAACCAGCCACAGGCTCCCACAGCGC
CTGTTCCCCACACCCACATCCAACAGGCACCGGCCTTGCACCCCCAGCGGCCGCCCTCACCGCATCCCCC
GCCGCATCCCTCGCCACATCCCCCGCTGCAGCCTCTGACTGGGTCGGCGGGCCAGCCTTCTGCACCCTCT
CATGCCCAGCCCCCACTGCACGGTCAGGGCCCACCCGGCCCTCACAGCCTGCAGGCTGGGCCCCTGCTGC
AGCACCCAGGCCCCCCACAGCCCTTTGGCCTCCCTCCCCAGGCCTCCCAAGGCCAGGCCCCTCTGGGGAC
CTCCCCAGCAGCAGCGTACCCTCACACCTCCCTGCAGCTGCCAGCCTCTCAGTCAGCGCTGCAGTCCCAA
CAGCCTCCACGGGAGCAGCCCCTGCCACCAGCGCCCTTGGCCATGCCCCACATCAAGCCCCCGCCTACCA
CTCCCATCCCCCAGCTGCCGGCGCCACAGGCCCACAAGCACCCTCCCCACCTCTCGGGGCCCTCACCCTT
CTCCATGAATGCCAACCTGCCTCCCCCTCCAGCCCTGAAGCCCCTGAGCTCCCTGTCCACACATCACCCC
CCGTCGGCTCACCCCCCACCCCTGCAACTCATGCCTCAGAGCCAGCCATTGCCCTCCTCGCCCGCCCAGC
CCCCCGGGCTGACCCAGAGCCAGAACCTGCCCCCGCCCCCTGCCTCCCACCCCCCTACAGGCCTCCACCA
GGTGGCCCCCCAACCCCCGTTTGCTCAGCACCCCTTTGTCCCTGGAGGCCCTCCTCCCATCACCCCTCCG
ACCTGCCCCTCCACCTCTACCCCACCGGCGGGACCTGGCACCTCGGCCCAGCCACCCTGCTCTGGTGCGG
CGGCTTCAGGAGGCAGCATAGCGGGGGGGTCGTCCTGCCCACTCCCCACCGTCCAGATCAAGGAGGAGGC
TCTGGACGACGCTGAGGAGCCTGAGAGCCCCCCTCCCCCACCAAGGAGCCCGTCCCCGGAGCCCACTGTG
GTGGACACCCCCAGTCACGCCAGCCAGTCAGCTAGGTTCTACAAACACCTGGACCGGGGCTACAACTCGT
GTGCCCGGACAGACCTGTACTTCATGCCTCTGGCCGGGTCCAAGCTGGCCAAGAAGAGGGAGGAGGCCAT
TGAGAAGGCCAAGCGCGAGGCTGAGCAGAAAGCCCGAGAGGAGCGAGAGCGGGAGAAGGAGAAGGAGAAG
GAGCGGGAGCGGGAGCGAGAGCGGGAGCGCGAGGCAGAGCGGGCGGCTAAGGCGTCCAGCTCAGCGCATG
AAGGTCGCCTCAGTGACCCACAGCTCAGTGGTCCTGGCCACATGCGGCCATCCTTCGAGCCACCACCAAC
CACCATTGCTGCTGTGCCCCCCTACATCGGGCCCGACACACCTGCCCTTCGGACTCTGAGCGAGTACGCC
CGGCCCCACGTCATGTCGCCCACCAACCGCAACCACCCCTTCTACATGCCCCTTAACCCCACGGACCCCC
TGCTGGCCTACCACATGCCTGGCCTCTACAACGTCGACCCCACCATCCGCGAGCGGGAGCTCCGGGAGCG
GGAGATCCGAGAGCGGGAGATCCGAGAGCGGGAGCTGCGGGAGAGGATGAAGCCGGGCTTCGAGGTGAAG
CCCCCAGAGCTGGACCCCCTGCACCCAGCCGCCAACCCCATGGAGCACTTTGCCCGGCACAGCGCCCTCA
CCATCCCCCCGACCGCCGGGCCCCACCCTTTTGCTTCTTTCCACCCGGGCCTGAACCCCTTGGAGAGGGA
GAGACTGGCCCTGGCGGGCCCCCAGCTGCGGCCCGAGATGAGCTACCCTGACAGACTGGCAGCCGAGCGT
ATCCACGCAGAGCGCATGGCATCGCTGACCAGCGATCCCCTGGCCCGACTGCAGATGTTCAACGTGACTC
CGCACCATCACCAGCACTCTCACATTCACTCCCACCTCCACCTCCACCAGCAGGACCCCCTCCACCAAGG
TTCAGCAGGCCCCGTTCACCCGCTGGTCGACCCCCTGACTGCCGGTCCCCACCTGGCTCGCTTCCCCTAC
CCGCCTGGCACTCTCCCCAACCCTCTGCTTGGACAGCCCCCACACGAGCACGAGATGCTTCGCCACCCAG
TTTTCGGCACCCCCTACCCCCGTGACCTGCCTGGGGCCATCCCACCCCCCATGTCAGCAGCCCACCAGCT
GCAGGCCATGCATGCCCAGTCGGCCGAGCTGCAGAGACTGGCCATGGAGCAGCAGTGGCTGCATGGACAC
CCCCACATGCATGGTGGCCACCTACCAAGTCAGGAAGATTATTACAGTCGACTGAAGAAAGAAGGTGACA
AGCAGTTATAA

Translation (1566 aa):
MTADKDKDKDKEKDRDRDRDREREKRDKARESENSRPRRSCTLEGGAKNYAESDHSEDEDNDNNSATAEE
STKKNKKKPPKKKSRYERTDTGEITSYITEDDVVYRPGDCVYIESRRPNTPYFICSIQDFKLVHNSQACC
RSPTPALCDPPACSLPVASQPPQHLSEAGRGPVGSKRDHLLMNVKWYYRQSEVPDSVYQHLVQDRHNEND
SGRELVITDPVIKNRELFISDYVDTYHAAALRGKCNISHFSDIFAAREFKARVDSFFYILGYNPETRRLN
STQGEIRVGPSHQAKLPDLQPFPSPDGDTVTQHEELVWMPGVNDCDLLMYLRAARSMAAFAGMCDGGSTE
DGCVAASRDDTTLNALNTLHESGYDAGKALQRLVKKPVPKLIEKCWTEDEVKRFVKGLRQYGKNFFRIRK
ELLPNKETGELITFYYYWKKTPEAASSRAHRRHRRQAVFRRIKTRTASTPVNTPSRPPSSEFLDLSSASE
DDFDSEDSEQELKGYACRHCFTTTSKDWHHGGRENILLCTDCRIHFKKYGELPPIEKPVDPPPFMFKPVK
EEDDGLSGKHSMRTRRSRGSMSTLRSGRKKQPASPDGRTSPINEDIRSSGRNSPSAASTSSNDSKAETVK
KSAKKVKEEASSPLKSNKRQREKVASDTEEADRTSSKKTKTQEISRPNSPSEGEGESSDSRSVNDEGSSD
PKDIDQDNRSTSPSIPSPQDNESDSDSSAQQQMLQAQPPALQAPTGVTPAPSSAPPGTPQLPTPGPTPSA
TAVPPQGSPTASQAPNQPQAPTAPVPHTHIQQAPALHPQRPPSPHPPPHPSPHPPLQPLTGSAGQPSAPS
HAQPPLHGQGPPGPHSLQAGPLLQHPGPPQPFGLPPQASQGQAPLGTSPAAAYPHTSLQLPASQSALQSQ
QPPREQPLPPAPLAMPHIKPPPTTPIPQLPAPQAHKHPPHLSGPSPFSMNANLPPPPALKPLSSLSTHHP
PSAHPPPLQLMPQSQPLPSSPAQPPGLTQSQNLPPPPASHPPTGLHQVAPQPPFAQHPFVPGGPPPITPP
TCPSTSTPPAGPGTSAQPPCSGAAASGGSIAGGSSCPLPTVQIKEEALDDAEEPESPPPPPRSPSPEPTV
VDTPSHASQSARFYKHLDRGYNSCARTDLYFMPLAGSKLAKKREEAIEKAKREAEQKAREEREREKEKEK
EREREREREREAERAAKASSSAHEGRLSDPQLSGPGHMRPSFEPPPTTIAAVPPYIGPDTPALRTLSEYA
RPHVMSPTNRNHPFYMPLNPTDPLLAYHMPGLYNVDPTIRERELREREIREREIRERELRERMKPGFEVK
PPELDPLHPAANPMEHFARHSALTIPPTAGPHPFASFHPGLNPLERERLALAGPQLRPEMSYPDRLAAER
IHAERMASLTSDPLARLQMFNVTPHHHQHSHIHSHLHLHQQDPLHQGSAGPVHPLVDPLTAGPHLARFPY
PPGTLPNPLLGQPPHEHEMLRHPVFGTPYPRDLPGAIPPPMSAAHQLQAMHAQSAELQRLAMEQQWLHGH
PHMHGGHLPSQEDYYSRLKKEGDKQL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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