NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS9489.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9489.1 Public Homo sapiens 13 SLC15A1 24 110 108 CCDS HistoryNCBI Gene:6564Re-query CCDS DB by CCDS ID:9489.1Re-query CCDS DB by GeneID:6564See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9489.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000376503.10 ENSP00000365686.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000376503.10Link to Ensembl Protein Viewer:ENSP00000365686.4Re-query CCDS DB by Nucleotide ID:ENST00000376503Re-query CCDS DB by Protein ID:ENSP00000365686
Original member Current member NCBI NM_005073.4 NP_005064.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005073.4Link to Protein Sequence:NP_005064.1Re-query CCDS DB by Nucleotide ID:NM_005073Re-query CCDS DB by Protein ID:NP_005064Link to BLAST:NP_005064.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005064.1 708 P46059 708 100% 0 0

Chromosomal Locations for CCDS 9489.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 98684724 98684915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 98686190 98686297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 98687581 98687724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 98688248 98688356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 98688470 98688577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 98702480 98702529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 98704289 98704435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 98706134 98706253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 98708686 98708767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 98709572 98709660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 98709742 98709774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 98709867 98709911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 98711854 98711943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 98712498 98712584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 98715878 98715960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 98719237 98719320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 98721495 98721585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 98721804 98721903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 98723912 98724031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 98726123 98726264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 98726368 98726449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 98726843 98726859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 98752595 98752598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2127 nt):
ATGGGAATGTCCAAATCACACAGTTTCTTTGGTTATCCCCTGAGCATCTTCTTCATCGTGGTCAATGAGT
TTTGCGAAAGATTTTCCTACTATGGAATGCGAGCAATCCTGATTCTGTACTTCACAAATTTCATCAGCTG
GGATGATAACCTGTCCACCGCCATCTACCATACGTTTGTGGCTCTGTGCTACCTGACGCCAATTCTCGGA
GCTCTTATCGCCGACTCGTGGCTGGGAAAGTTCAAGACCATTGTGTCGCTCTCCATTGTCTACACAATTG
GACAAGCAGTCACCTCAGTAAGCTCCATTAATGACCTCACAGACCACAACCATGATGGCACCCCCGACAG
CCTTCCTGTGCACGTGGTGCTGTCCTTGATCGGCCTGGCCCTGATAGCTCTCGGGACTGGAGGAATCAAA
CCCTGTGTGTCTGCGTTTGGTGGAGATCAGTTTGAAGAGGGCCAGGAGAAACAAAGAAACAGATTTTTTT
CCATCTTTTACTTGGCTATTAATGCTGGAAGTTTGCTTTCCACAATCATCACACCCATGCTCAGAGTTCA
ACAATGTGGAATTCACAGTAAACAAGCTTGTTACCCACTGGCCTTTGGGGTTCCTGCTGCTCTCATGGCT
GTAGCCCTGATTGTGTTTGTCCTTGGCAGTGGGATGTACAAGAAGTTCAAGCCACAGGGCAACATCATGG
GTAAAGTGGCCAAGTGCATCGGTTTTGCCATCAAAAATAGATTTAGGCATCGGAGTAAGGCATTTCCCAA
GAGGGAGCACTGGCTGGACTGGGCTAAAGAGAAATACGATGAGCGGCTCATCTCCCAAATTAAGATGGTT
ACGAGGGTGATGTTCCTGTATATTCCACTCCCAATGTTCTGGGCCTTGTTTGACCAGCAGGGCTCCAGGT
GGACACTGCAGGCAACAACTATGTCCGGGAAAATCGGAGCTCTTGAAATTCAGCCCGATCAGATGCAGAC
CGTGAACGCCATCCTGATCGTGATCATGGTCCCGATCTTCGATGCTGTGCTGTACCCTCTCATTGCAAAA
TGTGGCTTCAATTTCACCTCCTTGAAGAAGATGGCAGTTGGCATGGTCCTGGCCTCCATGGCCTTTGTGG
TGGCTGCCATCGTGCAGGTGGAAATCGATAAAACTCTTCCAGTCTTCCCCAAAGGAAACGAAGTCCAAAT
TAAAGTTTTGAATATAGGAAACAATACCATGAATATATCTCTTCCTGGAGAGATGGTGACACTTGGCCCA
ATGTCTCAAACAAATGCATTTATGACTTTTGATGTAAACAAACTGACAAGGATAAACATTTCTTCTCCTG
GATCACCAGTCACTGCTGTAACTGACGACTTCAAGCAGGGCCAACGCCACACGCTTCTAGTGTGGGCCCC
CAATCACTACCAGGTGGTAAAGGATGGTCTTAACCAGAAGCCAGAAAAAGGGGAAAATGGAATCAGATTT
GTAAATACTTTTAACGAGCTCATCACCATCACAATGAGTGGGAAAGTTTATGCAAACATCAGCAGCTACA
ATGCCAGCACATACCAGTTTTTTCCTTCTGGCATAAAAGGCTTCACAATAAGCTCAACAGAGATTCCGCC
ACAATGTCAACCTAATTTCAATACTTTCTACCTTGAATTTGGTAGTGCTTATACCTATATAGTCCAAAGG
AAGAATGACAGCTGCCCTGAAGTGAAGGTGTTTGAAGATATTTCAGCCAACACAGTTAACATGGCTCTGC
AAATCCCGCAGTATTTTCTTCTCACCTGTGGCGAAGTGGTCTTCTCTGTCACGGGATTGGAATTCTCATA
TTCTCAGGCTCCTTCCAACATGAAGTCGGTGCTTCAGGCAGGATGGCTGCTGACCGTGGCTGTTGGCAAC
ATCATTGTGCTCATCGTGGCAGGGGCAGGCCAGTTCAGCAAACAGTGGGCCGAGTACATTCTATTTGCCG
CGTTGCTTCTGGTCGTCTGTGTAATTTTTGCCATCATGGCTCGGTTCTATACTTACATCAACCCAGCGGA
GATCGAAGCTCAATTTGATGAGGATGAAAAGAAAAACAGACTGGAAAAGAGTAACCCATATTTCATGTCA
GGGGCCAATTCACAGAAACAGATGTGA

Translation (708 aa):
MGMSKSHSFFGYPLSIFFIVVNEFCERFSYYGMRAILILYFTNFISWDDNLSTAIYHTFVALCYLTPILG
ALIADSWLGKFKTIVSLSIVYTIGQAVTSVSSINDLTDHNHDGTPDSLPVHVVLSLIGLALIALGTGGIK
PCVSAFGGDQFEEGQEKQRNRFFSIFYLAINAGSLLSTIITPMLRVQQCGIHSKQACYPLAFGVPAALMA
VALIVFVLGSGMYKKFKPQGNIMGKVAKCIGFAIKNRFRHRSKAFPKREHWLDWAKEKYDERLISQIKMV
TRVMFLYIPLPMFWALFDQQGSRWTLQATTMSGKIGALEIQPDQMQTVNAILIVIMVPIFDAVLYPLIAK
CGFNFTSLKKMAVGMVLASMAFVVAAIVQVEIDKTLPVFPKGNEVQIKVLNIGNNTMNISLPGEMVTLGP
MSQTNAFMTFDVNKLTRINISSPGSPVTAVTDDFKQGQRHTLLVWAPNHYQVVKDGLNQKPEKGENGIRF
VNTFNELITITMSGKVYANISSYNASTYQFFPSGIKGFTISSTEIPPQCQPNFNTFYLEFGSAYTYIVQR
KNDSCPEVKVFEDISANTVNMALQIPQYFLLTCGEVVFSVTGLEFSYSQAPSNMKSVLQAGWLLTVAVGN
IIVLIVAGAGQFSKQWAEYILFAALLLVVCVIFAIMARFYTYINPAEIEAQFDEDEKKNRLEKSNPYFMS
GANSQKQM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH