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Report for CCDS9484.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9484.1 Public Homo sapiens 13 MBNL2 24 110 108 CCDS HistoryNCBI Gene:10150Re-query CCDS DB by CCDS ID:9484.1Re-query CCDS DB by GeneID:10150See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9484.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000345429.10 ENSP00000267287.7 Accepted alive Link to Ensembl Transcript Viewer:ENST00000345429.10Link to Ensembl Protein Viewer:ENSP00000267287.7Re-query CCDS DB by Nucleotide ID:ENST00000345429Re-query CCDS DB by Protein ID:ENSP00000267287
Original member Current member NCBI NM_001382649.1 NP_001369578.1 Accepted alive Link to Nucleotide Sequence:NM_001382649.1Link to Protein Sequence:NP_001369578.1Re-query CCDS DB by Nucleotide ID:NM_001382649Re-query CCDS DB by Protein ID:NP_001369578Link to BLAST:NP_001369578.1
Original member Current member NCBI NM_001382650.1 NP_001369579.1 Accepted alive Link to Nucleotide Sequence:NM_001382650.1Link to Protein Sequence:NP_001369579.1Re-query CCDS DB by Nucleotide ID:NM_001382650Re-query CCDS DB by Protein ID:NP_001369579Link to BLAST:NP_001369579.1
Original member Current member NCBI NM_144778.4 NP_659002.1 Accepted alive Link to Nucleotide Sequence:NM_144778.4Link to Protein Sequence:NP_659002.1Re-query CCDS DB by Nucleotide ID:NM_144778Re-query CCDS DB by Protein ID:NP_659002Link to BLAST:NP_659002.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001369578.1 367 Q5VZF2-2 367 100% 0 0
NP_001369579.1 367 Q5VZF2-2 367 100% 0 0
NP_659002.1 367 Q5VZF2-2 367 100% 0 0

Chromosomal Locations for CCDS 9484.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 97276236 97276409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 97334276 97334440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 97343016 97343216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 97346804 97347067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 97357482 97357635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 97365136 97365171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 97366459 97366553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 97391322 97391336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1104 nt):
ATGGCTTTGAACGTTGCCCCAGTCAGAGATACAAAATGGCTGACATTAGAAGTCTGCAGACAGTTTCAAA
GAGGAACATGCTCACGCTCTGATGAAGAATGCAAATTTGCTCATCCCCCCAAAAGTTGTCAGGTTGAAAA
TGGAAGAGTAATTGCCTGCTTTGATTCCCTAAAGGGCCGTTGTTCGAGAGAGAACTGCAAGTATCTTCAC
CCTCCGACACACTTAAAAACTCAACTAGAAATTAATGGAAGGAACAATTTGATTCAGCAAAAAACTGCAG
CAGCAATGCTTGCCCAGCAGATGCAATTTATGTTTCCAGGAACACCACTTCATCCAGTGCCCACTTTCCC
TGTAGGTCCCGCGATAGGGACAAATACGGCTATTAGCTTTGCTCCTTACCTAGCACCTGTAACCCCTGGA
GTTGGGTTGGTCCCAACGGAAATTCTGCCCACCACGCCTGTTATTGTTCCCGGAAGTCCACCGGTCACTG
TCCCGGGCTCAACTGCAACTCAGAAACTTCTCAGGACTGACAAACTGGAGGTATGCAGGGAGTTCCAGCG
AGGAAACTGTGCCCGGGGAGAGACCGACTGCCGCTTTGCACACCCCGCAGACAGCACCATGATCGACACA
AGTGACAACACCGTAACCGTTTGTATGGATTACATAAAGGGGCGTTGCATGAGGGAGAAATGCAAATATT
TTCACCCTCCTGCACACTTGCAGGCCAAAATCAAAGCTGCGCAGCACCAAGCCAACCAAGCTGCGGTGGC
CGCCCAGGCAGCCGCGGCCGCGGCCACAGTCATGGCCTTTCCCCCTGGTGCTCTTCATCCTTTACCAAAG
AGACAAGCACTTGAAAAAAGCAATGGTACCAGCGCGGTCTTTAACCCCAGCGTCTTGCACTACCAGCAGG
CTCTCACCAGCGCACAGTTGCAGCAACACGCCGCGTTCATTCCAACAGGGTCAGTTTTGTGCATGACACC
CGCTACCAGTATTGTACCCATGATGCACAGCGCTACGTCCGCCACTGTCTCTGCAGCAACAACTCCTGCA
ACAAGTGTCCCCTTCGCAGCAACAGCCACAGCCAATCAGATAATTCTGAAATAA

Translation (367 aa):
MALNVAPVRDTKWLTLEVCRQFQRGTCSRSDEECKFAHPPKSCQVENGRVIACFDSLKGRCSRENCKYLH
PPTHLKTQLEINGRNNLIQQKTAAAMLAQQMQFMFPGTPLHPVPTFPVGPAIGTNTAISFAPYLAPVTPG
VGLVPTEILPTTPVIVPGSPPVTVPGSTATQKLLRTDKLEVCREFQRGNCARGETDCRFAHPADSTMIDT
SDNTVTVCMDYIKGRCMREKCKYFHPPAHLQAKIKAAQHQANQAAVAAQAAAAAATVMAFPPGALHPLPK
RQALEKSNGTSAVFNPSVLHYQQALTSAQLQQHAAFIPTGSVLCMTPATSIVPMMHSATSATVSAATTPA
TSVPFAATATANQIILK


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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