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Report for CCDS94717.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
94717.1 Public Homo sapiens Y RBMY1F 24 110 108 CCDS HistoryNCBI Gene:159163Re-query CCDS DB by CCDS ID:94717.1Re-query CCDS DB by GeneID:159163See the combined annotation on chromosome Y in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 94717.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000454978.2 ENSP00000406005.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000454978.2Link to Ensembl Protein Viewer:ENSP00000406005.2Re-query CCDS DB by Nucleotide ID:ENST00000454978Re-query CCDS DB by Protein ID:ENSP00000406005
Original member Current member NCBI NM_001382381.1 NP_001369310.1 Accepted alive Link to Nucleotide Sequence:NM_001382381.1Link to Protein Sequence:NP_001369310.1Re-query CCDS DB by Nucleotide ID:NM_001382381Re-query CCDS DB by Protein ID:NP_001369310Link to BLAST:NP_001369310.1

Chromosomal Locations for CCDS 94717.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome Y (NC_000024.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome YSee the combined annotation on chromosome Y in Sequence Viewer

Chromosome Start Stop Links
Y 22168820 22169118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 22169530 22169618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 22170739 22170849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 22171284 22171394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 22171835 22171945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 22172901 22173015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 22175026 22175178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 22177094 22177271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 22180291 22180394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 22180861 22180969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1380 nt):
ATGGTAGAAGCAGATCATCCTGGCAAGCTTTTCATTGGTGGCCTCAATAGAGAAACCAATGAGAAGATGC
TTAAAGCAGTATTTGGGAAACATGGTCCCATATCAGAAGTTCTTTTGATAAAGGATCGAACCAGCAAATC
CAGAGGCTTTGCATTTATTACTTTTGAGAACCCTGCAGATGCTAAGAATGCTGCGAAAGATATGAATGGA
ACGTCTTTGCATGGAAAAGCAATAAAAGTAGAACAAGCCAAGAAACCATCTTTTCAAAGTGGTGGTAGGC
GGAGACCACCAGCTTCTTCGAGAAACAGAAGCCCTTCAGGAAGTCTGAGATCTGCAAGAGGAAGCAGTGG
AGGAACAAGAGGGTGGCTTCCCTCACATGAAGGGCACCTGGATGATGGTGGATACACTCCTGATCTCAAG
ATGAGTTATTCTAGGGGACTCATTCCAGTTAAAAGAGGTCCATCTTCAAGAAGTGGAGGTCCTCCTCCGA
AAAAATCTGCTCCTTCTGCTGTGGCAAGAAGCAATAGTTGGATGGGAAGCCAAGGTCCCATGTCACAAAG
AAGAGAGAATTATGGAGTTCCTCCACGCAGAGCGACAATATCTTCCTGGAGAAATGATCGCATGTCAACA
AGACATGATGGTTATGCAACTAACGATGGAAATCATCCAAGTTGCCAAGAAACGAGGGATTATGCTCCAC
CATCTAGAGGCTATGCATACCGTGATAATGGTCATTCTAATCGGGATGAACATTCCTCTAGAGGATATAG
AAATCATCGAAGTTCCCGAGAAACTAGGGATTATGCTCCACCATCTAGAGGCCATGCATACCGTGATTAT
GGTCATTCTCGTCGGGATGAAAGTTATTCTAGAGGATACAGAAATCATCGAAGTTCCCGAGAAACTAGGG
AGTATGCTCCACCATCTAGAGGCCATGGATACCGTGATTATGGTCATTCTCGTCGACATGAAAGTTATTC
TAGAGGATATAGTTATCATGATGGCTACGGTGAGGCCCTTGGTAGAGATCATTCTGAACATCTAAGTGGA
AGTTCTTATAGAGATGCACTTCAGAGGTACGGGACCTCTCATGGTGCACCACCTGCAAGAGGGCCTCGGA
TGTCTTATGGTGGAAGCACCTGCCACGCATATAGTAATACACGAGATAGATATGGCAGAAGTTGGGAGAG
TTACTCGAGCTGTGGTGATTTTCATTATTGTGATCGTGAGCATGTTTGCAGAAAAGACCAAAGGAATCCG
CCTTCTCTGGGTAGGGTGCTCCCTGATCCTCGTGAAGCATATGGTAGCTCAAGTTATGTGGCATCTATAG
TAGATGGTGGGGAGAGTCGATCTGAAAAAGGAGACTCGAGCAGATATTAA

Translation (459 aa):
MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNG
TSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSSGGTRGWLPSHEGHLDDGGYTPDLK
MSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMGSQGPMSQRRENYGVPPRRATISSWRNDRMST
RHDGYATNDGNHPSCQETRDYAPPSRGYAYRDNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDY
GHSRRDESYSRGYRNHRSSRETREYAPPSRGHGYRDYGHSRRHESYSRGYSYHDGYGEALGRDHSEHLSG
SSYRDALQRYGTSHGAPPARGPRMSYGGSTCHAYSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRNP
PSLGRVLPDPREAYGSSSYVASIVDGGESRSEKGDSSRY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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