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Report for CCDS9460.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9460.1 Public Homo sapiens 13 SLAIN1 24 110 108 CCDS HistoryNCBI Gene:122060Re-query CCDS DB by CCDS ID:9460.1Re-query CCDS DB by GeneID:122060See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9460.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000358679.3 ENSP00000351507.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000358679.3Link to Ensembl Protein Viewer:ENSP00000351507.2Re-query CCDS DB by Nucleotide ID:ENST00000358679Re-query CCDS DB by Protein ID:ENSP00000351507
Original member Current member NCBI NM_001366666.1 NP_001353595.1 Accepted alive Link to Nucleotide Sequence:NM_001366666.1Link to Protein Sequence:NP_001353595.1Re-query CCDS DB by Nucleotide ID:NM_001366666Re-query CCDS DB by Protein ID:NP_001353595Link to BLAST:NP_001353595.1
Original member Current member NCBI NM_144595.4 NP_653196.1 Accepted alive Link to Nucleotide Sequence:NM_144595.4Link to Protein Sequence:NP_653196.1Re-query CCDS DB by Nucleotide ID:NM_144595Re-query CCDS DB by Protein ID:NP_653196Link to BLAST:NP_653196.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001353595.1 305 Q8ND83-2 305 100% 0 0
NP_653196.1 305 Q8ND83-2 305 100% 0 0

Chromosomal Locations for CCDS 9460.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 77744372 77744432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77746514 77746855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77753203 77753358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77760828 77761110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77763145 77763220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (918 nt):
ATGGGATATAAATTACAGGACCTCACTGATGTTCAGATCATGGCTCGTCTGCAAGAAGAAAGTCTCAGGC
AAGATTATGCTTCTACTTCAGCATCTGTATCAAGACATAGTTCCAGTGTGTCATTGAGTTCAGGAAAAAA
AGGGACATGTAGTGATCAAGAATATGACCAATACAGTCTGGAGGATGAAGAGGAATTTGATCATTTGCCA
CCACCTCAGCCTCGTCTTCCAAGATGTTCCCCTTTCCAAAGAGGAATTCCCCATTCACAGACTTTCTCCA
GCATTCGGGAGTGTAGGAGGAGCCCCAGTTCCCAGTATTTTCCTTCAAATAATTACCAGCAGCAACAGTA
TTATTCACCTCAAGCCCAAACTCCAGATCAGCAACCAAATAGGACCAATGGAGATAAGCTCCGAAGAAGT
ATGCCTAACCTAGCCCGGATGCCAAGTACAACTGCCATTAGTAGCAACATTAGTTCTCCGGTCACCGTGC
GAAATAGTCAGAGTTTTGACTCAAGCTTGCATGGAGCTGGAAATGGAATTTCAAGAATACAATCTTGTAT
TCCATCACCGGGACAGCTTCAACACAGGGTCCACAGCGTGGGGCATTTCCCAGTGTCTATCCGACAGCCT
CTTAAAGCCACAGCCTATGTGAGTCCAACCGTTCAAGGCAGCAGTAACATGCCTTTATCAAACGGCTTAC
AGCTGTATTCCAACACAGGAATCCCCACACCGAACAAAGCTGCAGCTTCTGGGATAATGGGTCGCAGTGC
ACTCCCAAGACCTTCGTTGGCAATAAATGGGAGTAACCTGCCTCGAAGCAAAATTGCACAACCTGTTAGA
AGTTTTCTTCAGCCTCCAAAGCCTCTGTCTTCACTCAGCACTCTGAGGGATGGAAATTGGAGAGATGGTT
GCTACTAA

Translation (305 aa):
MGYKLQDLTDVQIMARLQEESLRQDYASTSASVSRHSSSVSLSSGKKGTCSDQEYDQYSLEDEEEFDHLP
PPQPRLPRCSPFQRGIPHSQTFSSIRECRRSPSSQYFPSNNYQQQQYYSPQAQTPDQQPNRTNGDKLRRS
MPNLARMPSTTAISSNISSPVTVRNSQSFDSSLHGAGNGISRIQSCIPSPGQLQHRVHSVGHFPVSIRQP
LKATAYVSPTVQGSSNMPLSNGLQLYSNTGIPTPNKAAASGIMGRSALPRPSLAINGSNLPRSKIAQPVR
SFLQPPKPLSSLSTLRDGNWRDGCY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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