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Report for CCDS94580.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
94580.1 Public Homo sapiens X SUPT20HL2 24 110 108 CCDS HistoryNCBI Gene:170067Re-query CCDS DB by CCDS ID:94580.1Re-query CCDS DB by GeneID:170067See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 94580.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000486479.3 ENSP00000503941.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000486479.3Link to Ensembl Protein Viewer:ENSP00000503941.1Re-query CCDS DB by Nucleotide ID:ENST00000486479Re-query CCDS DB by Protein ID:ENSP00000503941
Original member Current member NCBI NM_001136233.3 NP_001129705.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001136233.3Link to Protein Sequence:NP_001129705.3Re-query CCDS DB by Nucleotide ID:NM_001136233Re-query CCDS DB by Protein ID:NP_001129705Link to BLAST:NP_001129705.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001129705.3 817 P0C7V6 817 100% 0 0

Chromosomal Locations for CCDS 94580.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 24310862 24313315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2454 nt):
ATGGATCGAGATTTAGAACAGGCTCTGGATCGCACAGAGAATATCACTGAAATTGCCCAACAGAGACGTC
CTAGAAGGAGATACTCACCTAGGGCGGGAAAAACTCTGCAGGAAAAACTTTATGACATTTATGTTGAAGA
ATGTGGAAAAGAGCCTGAGGATCCTCAGGAATTGAGAAGCAATGTAAACTTGTTAGAAAAGCTTGTTAGG
AGAGAGTCCTTGCCATGTTTACTGGTCAATCTATACCCAGGCAATCAGGGGTATTCTGTGATGCTCCAGA
GAGAAGATGGGTCCTTTGCAGAGACCATTCGGCTGCCTTATGAAGAAAGGGCATTGCTGGACTACTTGGA
TGCAGAAGAATTACCCCCTGCTTTGGGTGATGTCCTGGATAAAGCTTCGGTTAACATTTTTCATAGTGGG
TGTGTCATAGTAGAAGTTCGTGACTACAGGCAGTCCAGTAATATGCAACCTCCTGGTTACCAAAGCAGGC
ATATTCTTCTACGTCCAACCATGCAGACTTTAGCCCCTGAGGTGAAGACGATGACAAGAGATGGCGAGAA
ATGGAGCCAGGAAGACAAATTTCCTCTTGAGAGTCAACTGATCTTAGCGACAGCTGAACCACTGTGTCTT
GATCCTTCTGTAGCAGTTGCCTGCACTGCAAACAGGCTGCTGTACAACAAGCAAAAGATGAATACCGACC
CGATGGAACAGTGCCTCCAGAGGTATTCGTGGCCCTCTGTAAAGCCACAGCAGGAGCAGTCTGACTGTCC
ACCTCCTCCTGAGCTGAGAGTGTCGACTTCTGGCCAAAAAGAAGAAAGAAAAGTAGGTCAGCCTTGTGAG
CTGAACATTACTAAAGCGGGAAGTTGTGTAGACACGTGGAAAGGCAGACCCTGTGATTTGGCCGTGCCTT
CAGAAGTGGATGTGGAGAAACTTGCTAAAGGGTATCAGTCCGTCACAGCTGCTGACCCACAGCTCCCAGT
CTGGCCAGCCCAGGAGGTAGAAGACCCTTTCAGACATGCATGGGAAGCTGGCTGTCAGGCCTGGGACACC
AAGCCAAACATCATGCAGTCGTTTAATGATCCGCTTCTCTGTGGTAAAATACGGCCACGTAAAAAAGCCA
GGCAGAAGAGCCAGAAGTCTCCCTGGCAGCCCTTCCCAGATGACCATTCAGCTTGTCTCAGGCCTGGGTC
AGAGACTGATGCTGGGAGGGCAGTGAGTCAGGCCCAGGAATCGGTGCAGAGCAAAGTCAAAGGTCCAGGC
AAGATGTCACACAGCTCCAGTGGCCCAGCCAGTGTCAGTCAGCTCTCTTCATGGAAAACACCAGAACAGC
CTGATCCTGTGTGGGTCCAGTCTTCAGTATCCGGGAAGGGAGAGAAACATCCACCTCCCCGCACCCAACT
TCCCTCAAGCTCAGGAAAGATTTCCTCAGGTAACAGTTTTCCCCCACAACAGGCAGGCAGCCCTCTTAAG
CGTCCATTTCCTGCTGCTGCTCCTGCTGTAGCTGCTGCTGCTCCTGCTCCTGCTCCTGCTCCTGCTGCTG
CTCCTGCTTTAGCTGCTGCTGCTGTGGCGGCGGCGGCCGGTGGGGCGGCACCAAGCCATTCTCAGAAGCC
CTCTGTGCCTCTTATTAAAGCTAGCAGGCGCCGTCCAGCTGCCGGGCGCCCCACCAGATTCGTAAAAATA
GCCCCAGCCATTCAGGTCCGGACAGGCTCCACTGGCCTAAAGGCCACCAACGTGGAGGGCCCAGTCCGGG
GAGCCCAGGTTTTGGGGTGCAGTTTCAAGCCTGTGCAGGCCCCTGGCTCGGGTGCCCCCGCTCCTGCAGG
AATCAGTGGCAGTGGCCTTCAGTCCTCAGGAGGTCCACTACCAGATGCAAGGCCCGGTGCAGTGCAGGCA
TCTTCTCCAGCACCCCTTCAGTTTTTCCTAAATACTCCGGAAGGTCTCAGGCCTCTGACACTCCAGGTTC
CGCAGGGCTGGGCGGTTCTGACCGGCCCGCAGCAGCAGTCCCATCAGCTGGTTTCCCTGCAGCAGCTCCA
GCAGCCCACAGCTGCTCACCCTCCTCAGCCAGGGCCACAGGGTTCCACACTAGGTTTGAGCACGCAAGGG
CAGGCCTTCCCTGCTCAGCAACTTCTTAATGTGAACCTCACTGGAGCAGGTAGTGGTCTGCAGCCCCAGC
CCCAGGCTGCTGTGTTGAGTCTGCTTGGCTCTGCCCAGGTTCCTCAGCAGGGTGTCCAGCTCCCCTTTGT
CTTGGGGCAGCAGCCACAGCCGCTGCTGCTGCTGCAGCCACAACCACAGCCACAGCAGATCCAGCTCCAG
ACACAGCCTTTGAGAGTCCTGCAGCAGCCAGTGTTTTTGGCAACAGGCGCTGTTCAGATAGTGCAGCCAC
ATCCAGGTGTGCAAGCAGGGAGCCAGTTGGTAGGTCAGAGGAAGGGAGGCAAGCCAACCCCTCCAGCTCC
CTGA

Translation (817 aa):
MDRDLEQALDRTENITEIAQQRRPRRRYSPRAGKTLQEKLYDIYVEECGKEPEDPQELRSNVNLLEKLVR
RESLPCLLVNLYPGNQGYSVMLQREDGSFAETIRLPYEERALLDYLDAEELPPALGDVLDKASVNIFHSG
CVIVEVRDYRQSSNMQPPGYQSRHILLRPTMQTLAPEVKTMTRDGEKWSQEDKFPLESQLILATAEPLCL
DPSVAVACTANRLLYNKQKMNTDPMEQCLQRYSWPSVKPQQEQSDCPPPPELRVSTSGQKEERKVGQPCE
LNITKAGSCVDTWKGRPCDLAVPSEVDVEKLAKGYQSVTAADPQLPVWPAQEVEDPFRHAWEAGCQAWDT
KPNIMQSFNDPLLCGKIRPRKKARQKSQKSPWQPFPDDHSACLRPGSETDAGRAVSQAQESVQSKVKGPG
KMSHSSSGPASVSQLSSWKTPEQPDPVWVQSSVSGKGEKHPPPRTQLPSSSGKISSGNSFPPQQAGSPLK
RPFPAAAPAVAAAAPAPAPAPAAAPALAAAAVAAAAGGAAPSHSQKPSVPLIKASRRRPAAGRPTRFVKI
APAIQVRTGSTGLKATNVEGPVRGAQVLGCSFKPVQAPGSGAPAPAGISGSGLQSSGGPLPDARPGAVQA
SSPAPLQFFLNTPEGLRPLTLQVPQGWAVLTGPQQQSHQLVSLQQLQQPTAAHPPQPGPQGSTLGLSTQG
QAFPAQQLLNVNLTGAGSGLQPQPQAAVLSLLGSAQVPQQGVQLPFVLGQQPQPLLLLQPQPQPQQIQLQ
TQPLRVLQQPVFLATGAVQIVQPHPGVQAGSQLVGQRKGGKPTPPAP


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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