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Report for CCDS9444.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9444.1 Public Homo sapiens 13 PCDH9 24 110 108 CCDS HistoryNCBI Gene:5101Re-query CCDS DB by CCDS ID:9444.1Re-query CCDS DB by GeneID:5101See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9444.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000377865.7 ENSP00000367096.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000377865.7Link to Ensembl Protein Viewer:ENSP00000367096.2Re-query CCDS DB by Nucleotide ID:ENST00000377865Re-query CCDS DB by Protein ID:ENSP00000367096
Original member Current member NCBI NM_203487.3 NP_982354.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_203487.3Link to Protein Sequence:NP_982354.1Re-query CCDS DB by Nucleotide ID:NM_203487Re-query CCDS DB by Protein ID:NP_982354Link to BLAST:NP_982354.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_982354.1 1237 Q9HC56-1 1237 100% 0 0

Chromosomal Locations for CCDS 9444.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 66304655 66305028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 66631210 66631411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 66903504 66903605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 67225405 67228440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3714 nt):
ATGGACCTGAGGGATTTTTACCTGTTGGCTGCTCTGATTGCCTGTTTAAGGCTGGATTCCGCAATAGCTC
AAGAACTTATTTACACTATTAGAGAGGAATTGCCTGAAAATGTGCCCATAGGAAACATACCAAAGGATCT
GAACATTTCTCACATCAATGCTGCCACAGGGACCAGCGCCAGCCTTGTCTACAGACTGGTTTCTAAAGCT
GGGGATGCCCCTTTGGTGAAAGTTTCCAGCAGCACTGGGGAAATTTTCACAACCTCCAACAGAATAGACA
GAGAAAAACTCTGTGCTGGCGCCTCATATGCTGAGGAGAATGAGTGTTTCTTTGAACTTGAGGTGGTGAT
CCTCCCCAATGATTTCTTCAGGCTGATCAAAATAAAAATAATTGTCAAGGATACCAATGATAATGCCCCC
ATGTTTCCATCTCCTGTCATCAATATTTCCATTCCAGAAAACACTTTGATCAACAGCCGCTTTCCAATTC
CATCAGCAACAGATCCTGACACAGGCTTCAATGGTGTACAGCATTATGAATTGTTAAATGGGCAGAGTGT
TTTTGGACTGGATATCGTGGAAACTCCAGAGGGAGAGAAGTGGCCACAACTGATTGTTCAGCAAAACTTG
GATAGAGAACAGAAAGATACCTATGTGATGAAAATCAAAGTAGAGGATGGAGGCACTCCACAGAAATCCA
GTACGGCCATACTGCAGGTCACAGTAAGTGATGTAAATGACAACAGGCCAGTGTTTAAAGAGGGTCAAGT
GGAGGTGCATATTCCAGAGAATGCTCCCGTAGGTACCTCTGTAATTCAGCTCCATGCCACTGATGCAGAT
ATAGGCAGTAATGCTGAAATCCGGTACATTTTTGGTGCCCAGGTCGCCCCTGCAACCAAAAGACTCTTTG
CTTTAAATAATACTACTGGGCTGATTACAGTTCAGAGGTCCTTAGATAGAGAGGAGACAGCCATTCACAA
AGTGACAGTGCTGGCTAGTGACGGCAGCTCCACTCCTGCTCGAGCAACGGTTACCATCAATGTCACCGAT
GTAAATGATAACCCTCCTAATATAGACCTCAGGTACATTATAAGTCCCATCAATGGCACCGTGTATTTAT
CTGAGAAAGATCCTGTCAATACAAAGATTGCCCTAATTACAGTTTCAGATAAGGACACAGATGTGAATGG
CAAAGTGATCTGTTTTATTGAAAGAGAGGTCCCATTTCATTTGAAGGCGGTATATGACAACCAATATTTG
TTAGAGACCTCTTCTTTGTTGGACTATGAGGGCACCAAAGAATTCAGCTTTAAAATTGTTGCCTCTGATT
CTGGGAAGCCCAGTTTAAATCAGACTGCCCTGGTAAGGGTTAAGCTTGAGGATGAAAATGACAACCCACC
AATTTTCAACCAGCCTGTAATTGAGCTGTCAGTTTCTGAAAACAACCGACGTGGGTTATACTTAACAACT
ATTAGTGCCACAGATGAAGACAGTGGGAAAAATGCAGACATTGTTTATCAGCTTGGACCGAATGCCTCCT
TCTTTGATCTGGACCGAAAAACAGGAGTTTTGACAGCCTCCAGAGTATTTGACAGAGAAGAACAAGAACG
ATTCATTTTTACAGTAACTGCCAGGGACAATGGGACCCCTCCCCTCCAAAGCCAAGCGGCTGTGATTGTT
ACTGTTCTGGATGAGAATGACAATAGCCCCAAGTTTACTCATAATCATTTTCAATTTTTTGTGTCTGAGA
ATCTGCCAAAGTATAGTACTGTGGGGGTAATCACAGTGACAGATGCAGATGCTGGAGAGAATAAAGCTGT
GACTCTTTCCATTCTAAATGACAATGATAATTTTGTGTTGGATCCCTATTCTGGAGTCATAAAGTCAAAT
GTCTCATTTGATAGAGAGCAGCAGAGTTCCTACACTTTTGATGTCAAAGCCACTGATGGAGGACAACCAC
CTCGTTCCTCTACTGCAAAAGTAACTATCAACGTCATGGATGTCAATGACAACAGCCCAGTTGTCATTTC
TCCACCGTCTAATACTTCCTTTAAGTTGGTGCCCCTCTCAGCCATTCCTGGCTCCGTGGTAGCAGAAGTT
TTTGCAGTGGATGTTGACACTGGAATGAACGCTGAACTAAAGTATACTATAGTGAGTGGAAACAATAAAG
GCTTATTCCGGATTGATCCAGTAACAGGTAACATTACTCTGGAAGAAAAACCAGCACCTACTGATGTGGG
ATTGCATCGTTTGGTGGTCAACATAAGTGACCTGGGGTACCCTAAGTCTTTGCACACGCTTGTGCTTGTA
TTCCTTTATGTTAACGACACTGCTGGAAATGCCTCCTATATCTATGACTTGATCCGCAGGACTATGGAGA
CCCCGTTGGACAGGAACATAGGGGATAGTAGCCAACCCTATCAAAATGAGGACTATCTAACCATCATGAT
TGCCATCATCGCCGGTGCCATGGTGGTCATTGTTGTGATCTTCGTCACCGTTCTGGTGCGCTGTCGCCAT
GCATCAAGGTTCAAAGCAGCTCAGAGGAGCAAGCAAGGTGCCGAATGGATGTCCCCAAACCAGGAGAACA
AGCAAAACAAGAAAAAGAAAAGAAAGAAAAGGAAGTCTCCCAAAAGCTCTCTTTTGAACTTTGTTACTAT
CGAAGAGTCCAAACCCGATGATGCAGTTCATGAACCTATCAATGGGACAATAAGCCTGCCGGCTGAACTG
GAGGAGCAAAGTATAGGAAGATTTGACTGGGGCCCGGCACCTCCAACAACATTCAAGCCTAACAGTCCTG
ACCTGGCCAAGCACTACAAATCTGCTTCTCCACAGCCTGCTTTTCATCTCAAACCAGACACTCCAGTTTC
CGTGAAAAAGCACCACGTGATTCAGGAACTCCCTTTGGACAACACCTTTGTTGGGGGTTGTGACACCCTT
TCTAAACGCTCTTCCACTAGTTCAGATCACTTCAGTGCCTCAGAGTGCAGTTCCCAAGGAGGCTTCAAGA
CAAAGGGCCCCTTACACACCAGACAGTGTAACTCACACAGCAAAAGTGACAATATTCCTGTCACTCCTCA
GAAATGTCCCAGCTCCACGGGTTTCCACATTCAGGAGAATGAAGAAAGCCATTACGAGTCGCAGCGCCGT
GTTACGTTTCATCTCCCTGATGGCTCCCAGGAAAGCTGCAGTGACAGTGGTCTAGGAGACCATGAGCCGG
TGGGTAGTGGAACCCTGATCTCACACCCTCTTCCTCTGGTTCAGCCACAGGACGAATTCTATGACCAGGC
CTCTCCGGACAAGAGGACTGAAGCAGATGGCAACTCTGATCCCAACTCTGATGGGCCTTTGGGTCCCCGA
GGATTAGCTGAAGCTACAGAGATGTGCACTCAAGAGTGCTTGGTTTTGGGTCACTCTGATAATTGCTGGA
TGCCTCCTGGCTTGGGTCCATATCAACACCCCAAATCTCCTCTCTCAACCTTTGCACCCCAGAAAGAATG
GGTGAAGAAGGACAAGCTTGTGAATGGGCACACCCTGACCAGAGCCTGGAAAGAAGACAGCAACAGGAAC
CAGTTCAATGACCGTAAGCAGTATGGCTCCAATGAAGGCCATTTCAACAATGGCAGCCACATGACAGACA
TTCCTCTGGCAAATCTGAAGTCTTATAAGCAAGCAGGAGGTGCTACTGAGAGTCCTAAGGAGCACCAACT
CTAA

Translation (1237 aa):
MDLRDFYLLAALIACLRLDSAIAQELIYTIREELPENVPIGNIPKDLNISHINAATGTSASLVYRLVSKA
GDAPLVKVSSSTGEIFTTSNRIDREKLCAGASYAEENECFFELEVVILPNDFFRLIKIKIIVKDTNDNAP
MFPSPVINISIPENTLINSRFPIPSATDPDTGFNGVQHYELLNGQSVFGLDIVETPEGEKWPQLIVQQNL
DREQKDTYVMKIKVEDGGTPQKSSTAILQVTVSDVNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDAD
IGSNAEIRYIFGAQVAPATKRLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTPARATVTINVTD
VNDNPPNIDLRYIISPINGTVYLSEKDPVNTKIALITVSDKDTDVNGKVICFIEREVPFHLKAVYDNQYL
LETSSLLDYEGTKEFSFKIVASDSGKPSLNQTALVRVKLEDENDNPPIFNQPVIELSVSENNRRGLYLTT
ISATDEDSGKNADIVYQLGPNASFFDLDRKTGVLTASRVFDREEQERFIFTVTARDNGTPPLQSQAAVIV
TVLDENDNSPKFTHNHFQFFVSENLPKYSTVGVITVTDADAGENKAVTLSILNDNDNFVLDPYSGVIKSN
VSFDREQQSSYTFDVKATDGGQPPRSSTAKVTINVMDVNDNSPVVISPPSNTSFKLVPLSAIPGSVVAEV
FAVDVDTGMNAELKYTIVSGNNKGLFRIDPVTGNITLEEKPAPTDVGLHRLVVNISDLGYPKSLHTLVLV
FLYVNDTAGNASYIYDLIRRTMETPLDRNIGDSSQPYQNEDYLTIMIAIIAGAMVVIVVIFVTVLVRCRH
ASRFKAAQRSKQGAEWMSPNQENKQNKKKKRKKRKSPKSSLLNFVTIEESKPDDAVHEPINGTISLPAEL
EEQSIGRFDWGPAPPTTFKPNSPDLAKHYKSASPQPAFHLKPDTPVSVKKHHVIQELPLDNTFVGGCDTL
SKRSSTSSDHFSASECSSQGGFKTKGPLHTRQCNSHSKSDNIPVTPQKCPSSTGFHIQENEESHYESQRR
VTFHLPDGSQESCSDSGLGDHEPVGSGTLISHPLPLVQPQDEFYDQASPDKRTEADGNSDPNSDGPLGPR
GLAEATEMCTQECLVLGHSDNCWMPPGLGPYQHPKSPLSTFAPQKEWVKKDKLVNGHTLTRAWKEDSNRN
QFNDRKQYGSNEGHFNNGSHMTDIPLANLKSYKQAGGATESPKEHQL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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