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Report for CCDS9443.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9443.1 Public Homo sapiens 13 PCDH9 24 110 108 CCDS HistoryNCBI Gene:5101Re-query CCDS DB by CCDS ID:9443.1Re-query CCDS DB by GeneID:5101See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9443.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000544246.5 ENSP00000442186.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000544246.5Link to Ensembl Protein Viewer:ENSP00000442186.2Re-query CCDS DB by Nucleotide ID:ENST00000544246Re-query CCDS DB by Protein ID:ENSP00000442186
Original member Current member NCBI NM_020403.5 NP_065136.1 Accepted alive Link to Nucleotide Sequence:NM_020403.5Link to Protein Sequence:NP_065136.1Re-query CCDS DB by Nucleotide ID:NM_020403Re-query CCDS DB by Protein ID:NP_065136Link to BLAST:NP_065136.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065136.1 1203 Q9HC56-2 1203 100% 0 0

Chromosomal Locations for CCDS 9443.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 66304655 66305028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 66631210 66631411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 67225405 67228440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3612 nt):
ATGGACCTGAGGGATTTTTACCTGTTGGCTGCTCTGATTGCCTGTTTAAGGCTGGATTCCGCAATAGCTC
AAGAACTTATTTACACTATTAGAGAGGAATTGCCTGAAAATGTGCCCATAGGAAACATACCAAAGGATCT
GAACATTTCTCACATCAATGCTGCCACAGGGACCAGCGCCAGCCTTGTCTACAGACTGGTTTCTAAAGCT
GGGGATGCCCCTTTGGTGAAAGTTTCCAGCAGCACTGGGGAAATTTTCACAACCTCCAACAGAATAGACA
GAGAAAAACTCTGTGCTGGCGCCTCATATGCTGAGGAGAATGAGTGTTTCTTTGAACTTGAGGTGGTGAT
CCTCCCCAATGATTTCTTCAGGCTGATCAAAATAAAAATAATTGTCAAGGATACCAATGATAATGCCCCC
ATGTTTCCATCTCCTGTCATCAATATTTCCATTCCAGAAAACACTTTGATCAACAGCCGCTTTCCAATTC
CATCAGCAACAGATCCTGACACAGGCTTCAATGGTGTACAGCATTATGAATTGTTAAATGGGCAGAGTGT
TTTTGGACTGGATATCGTGGAAACTCCAGAGGGAGAGAAGTGGCCACAACTGATTGTTCAGCAAAACTTG
GATAGAGAACAGAAAGATACCTATGTGATGAAAATCAAAGTAGAGGATGGAGGCACTCCACAGAAATCCA
GTACGGCCATACTGCAGGTCACAGTAAGTGATGTAAATGACAACAGGCCAGTGTTTAAAGAGGGTCAAGT
GGAGGTGCATATTCCAGAGAATGCTCCCGTAGGTACCTCTGTAATTCAGCTCCATGCCACTGATGCAGAT
ATAGGCAGTAATGCTGAAATCCGGTACATTTTTGGTGCCCAGGTCGCCCCTGCAACCAAAAGACTCTTTG
CTTTAAATAATACTACTGGGCTGATTACAGTTCAGAGGTCCTTAGATAGAGAGGAGACAGCCATTCACAA
AGTGACAGTGCTGGCTAGTGACGGCAGCTCCACTCCTGCTCGAGCAACGGTTACCATCAATGTCACCGAT
GTAAATGATAACCCTCCTAATATAGACCTCAGGTACATTATAAGTCCCATCAATGGCACCGTGTATTTAT
CTGAGAAAGATCCTGTCAATACAAAGATTGCCCTAATTACAGTTTCAGATAAGGACACAGATGTGAATGG
CAAAGTGATCTGTTTTATTGAAAGAGAGGTCCCATTTCATTTGAAGGCGGTATATGACAACCAATATTTG
TTAGAGACCTCTTCTTTGTTGGACTATGAGGGCACCAAAGAATTCAGCTTTAAAATTGTTGCCTCTGATT
CTGGGAAGCCCAGTTTAAATCAGACTGCCCTGGTAAGGGTTAAGCTTGAGGATGAAAATGACAACCCACC
AATTTTCAACCAGCCTGTAATTGAGCTGTCAGTTTCTGAAAACAACCGACGTGGGTTATACTTAACAACT
ATTAGTGCCACAGATGAAGACAGTGGGAAAAATGCAGACATTGTTTATCAGCTTGGACCGAATGCCTCCT
TCTTTGATCTGGACCGAAAAACAGGAGTTTTGACAGCCTCCAGAGTATTTGACAGAGAAGAACAAGAACG
ATTCATTTTTACAGTAACTGCCAGGGACAATGGGACCCCTCCCCTCCAAAGCCAAGCGGCTGTGATTGTT
ACTGTTCTGGATGAGAATGACAATAGCCCCAAGTTTACTCATAATCATTTTCAATTTTTTGTGTCTGAGA
ATCTGCCAAAGTATAGTACTGTGGGGGTAATCACAGTGACAGATGCAGATGCTGGAGAGAATAAAGCTGT
GACTCTTTCCATTCTAAATGACAATGATAATTTTGTGTTGGATCCCTATTCTGGAGTCATAAAGTCAAAT
GTCTCATTTGATAGAGAGCAGCAGAGTTCCTACACTTTTGATGTCAAAGCCACTGATGGAGGACAACCAC
CTCGTTCCTCTACTGCAAAAGTAACTATCAACGTCATGGATGTCAATGACAACAGCCCAGTTGTCATTTC
TCCACCGTCTAATACTTCCTTTAAGTTGGTGCCCCTCTCAGCCATTCCTGGCTCCGTGGTAGCAGAAGTT
TTTGCAGTGGATGTTGACACTGGAATGAACGCTGAACTAAAGTATACTATAGTGAGTGGAAACAATAAAG
GCTTATTCCGGATTGATCCAGTAACAGGTAACATTACTCTGGAAGAAAAACCAGCACCTACTGATGTGGG
ATTGCATCGTTTGGTGGTCAACATAAGTGACCTGGGGTACCCTAAGTCTTTGCACACGCTTGTGCTTGTA
TTCCTTTATGTTAACGACACTGCTGGAAATGCCTCCTATATCTATGACTTGATCCGCAGGACTATGGAGA
CCCCGTTGGACAGGAACATAGGGGATAGTAGCCAACCCTATCAAAATGAGGACTATCTAACCATCATGAT
TGCCATCATCGCCGGTGCCATGGTGGTCATTGTTGTGATCTTCGTCACCGTTCTGGTGCGCTGTCGCCAT
GCATCAAGGTTCAAAGCAGCTCAGAGGAGCAAGCAAGGTGCCGAATGGATGTCCCCAAACCAGGAGAACA
AGCAAAACAAGAAAAAGAAAAGAAAGAAAAGGAAGTCTCCCAAAAGCTCTCTTTTGAACTTTGTTACTAT
CGAAGAGTCCAAACCCGATGATGCAGTTCATGAACCTATCAATGGGACAATAAGCCTGCCGGCTGAACTG
GAGGAGCAAAGTATAGGAAGATTTGACTGGGGCCCGGCACCTCCAACAACATTCAAGCCTAACAGTCCTG
ACCTGGCCAAGCACTACAAATCTGCTTCTCCACAGCCTGCTTTTCATCTCAAACCAGACACTCCAGTTTC
CGTGAAAAAGCACCACGTGATTCAGGAACTCCCTTTGGACAACACCTTTGTTGGGGGTTGTGACACCCTT
TCTAAACGCTCTTCCACTAGTTCAGATCACTTCAGTGCCTCAGAGTGCAGTTCCCAAGGAGGCTTCAAGA
CAAAGGGCCCCTTACACACCAGACAGTCGCAGCGCCGTGTTACGTTTCATCTCCCTGATGGCTCCCAGGA
AAGCTGCAGTGACAGTGGTCTAGGAGACCATGAGCCGGTGGGTAGTGGAACCCTGATCTCACACCCTCTT
CCTCTGGTTCAGCCACAGGACGAATTCTATGACCAGGCCTCTCCGGACAAGAGGACTGAAGCAGATGGCA
ACTCTGATCCCAACTCTGATGGGCCTTTGGGTCCCCGAGGATTAGCTGAAGCTACAGAGATGTGCACTCA
AGAGTGCTTGGTTTTGGGTCACTCTGATAATTGCTGGATGCCTCCTGGCTTGGGTCCATATCAACACCCC
AAATCTCCTCTCTCAACCTTTGCACCCCAGAAAGAATGGGTGAAGAAGGACAAGCTTGTGAATGGGCACA
CCCTGACCAGAGCCTGGAAAGAAGACAGCAACAGGAACCAGTTCAATGACCGTAAGCAGTATGGCTCCAA
TGAAGGCCATTTCAACAATGGCAGCCACATGACAGACATTCCTCTGGCAAATCTGAAGTCTTATAAGCAA
GCAGGAGGTGCTACTGAGAGTCCTAAGGAGCACCAACTCTAA

Translation (1203 aa):
MDLRDFYLLAALIACLRLDSAIAQELIYTIREELPENVPIGNIPKDLNISHINAATGTSASLVYRLVSKA
GDAPLVKVSSSTGEIFTTSNRIDREKLCAGASYAEENECFFELEVVILPNDFFRLIKIKIIVKDTNDNAP
MFPSPVINISIPENTLINSRFPIPSATDPDTGFNGVQHYELLNGQSVFGLDIVETPEGEKWPQLIVQQNL
DREQKDTYVMKIKVEDGGTPQKSSTAILQVTVSDVNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDAD
IGSNAEIRYIFGAQVAPATKRLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTPARATVTINVTD
VNDNPPNIDLRYIISPINGTVYLSEKDPVNTKIALITVSDKDTDVNGKVICFIEREVPFHLKAVYDNQYL
LETSSLLDYEGTKEFSFKIVASDSGKPSLNQTALVRVKLEDENDNPPIFNQPVIELSVSENNRRGLYLTT
ISATDEDSGKNADIVYQLGPNASFFDLDRKTGVLTASRVFDREEQERFIFTVTARDNGTPPLQSQAAVIV
TVLDENDNSPKFTHNHFQFFVSENLPKYSTVGVITVTDADAGENKAVTLSILNDNDNFVLDPYSGVIKSN
VSFDREQQSSYTFDVKATDGGQPPRSSTAKVTINVMDVNDNSPVVISPPSNTSFKLVPLSAIPGSVVAEV
FAVDVDTGMNAELKYTIVSGNNKGLFRIDPVTGNITLEEKPAPTDVGLHRLVVNISDLGYPKSLHTLVLV
FLYVNDTAGNASYIYDLIRRTMETPLDRNIGDSSQPYQNEDYLTIMIAIIAGAMVVIVVIFVTVLVRCRH
ASRFKAAQRSKQGAEWMSPNQENKQNKKKKRKKRKSPKSSLLNFVTIEESKPDDAVHEPINGTISLPAEL
EEQSIGRFDWGPAPPTTFKPNSPDLAKHYKSASPQPAFHLKPDTPVSVKKHHVIQELPLDNTFVGGCDTL
SKRSSTSSDHFSASECSSQGGFKTKGPLHTRQSQRRVTFHLPDGSQESCSDSGLGDHEPVGSGTLISHPL
PLVQPQDEFYDQASPDKRTEADGNSDPNSDGPLGPRGLAEATEMCTQECLVLGHSDNCWMPPGLGPYQHP
KSPLSTFAPQKEWVKKDKLVNGHTLTRAWKEDSNRNQFNDRKQYGSNEGHFNNGSHMTDIPLANLKSYKQ
AGGATESPKEHQL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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