NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS94299.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
94299.1 Public Homo sapiens 8 PPP1R42 24 110 108 CCDS HistoryNCBI Gene:286187Re-query CCDS DB by CCDS ID:94299.1Re-query CCDS DB by GeneID:286187See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 94299.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000685739.1 ENSP00000508980.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000685739.1Link to Ensembl Protein Viewer:ENSP00000508980.1Re-query CCDS DB by Nucleotide ID:ENST00000685739Re-query CCDS DB by Protein ID:ENSP00000508980
Original member Current member NCBI NM_001364910.1 NP_001351839.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001364910.1Link to Protein Sequence:NP_001351839.1Re-query CCDS DB by Nucleotide ID:NM_001364910Re-query CCDS DB by Protein ID:NP_001351839Link to BLAST:NP_001351839.1

Chromosomal Locations for CCDS 94299.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 66964321 66964334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 66982049 66982180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 66988400 66988517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 67010715 67010831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 67012958 67013096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 67014426 67014592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 67017619 67017747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (816 nt):
ATGGTTCGACTGACCTTGGATCTAATTGCCAGAAACAGCAATCTTAAACCCCGAAAAGAAGAAACCATTT
CACAGTGCCTGAAGAAAATAACTCATATAAATTTTTCAGACAAAAATATAGATGCAATTGAAGACCTCTC
TCTTTGCAAAAATCTTAGTGTTTTATATTTATATGATAATTGTATTAGTCAAATCACTAACCTGAATTAT
GCCACAAATCTGACCCACTTGTACCTACAAAACAATTGTATTTCATGTATAGAGAACCTCAGGTCATTAA
AGAAACTGGAAAAACTGTATCTGGGAGGCAATTACATTGCTGTCATAGAAGGTTTAGAAGGATTAGGAGA
ACTAAGAGAGCTTCATGTTGAGAATCAGAGGCTTCCCCTTGGGGAAAAGCTTCTGTTTGATCCAAGAACT
CTTCATTCTCTGGCAAAATCCCTCTGTATATTGAATATCAGCAATAATAATATTGATGACATTACAGACT
TAGAACTACTAGAGAATCTTAATCAGCTCATAGCCGTTGACAACCAACTTCTGCATGTGAAGGATTTGGA
GTTTTTACTGAACAAGTTGATGAAGCTGTGGAAAATTGATCTAAATGGAAATCCTGTTTGTCTCAAACCA
AAATACAGGGACAGACTGATATTGGTGTCCAAATCACTGGAATTTCTTGATGGAAAAGAAATTAAAAATA
TAGAAAGACAATTCCTAATGAATTGGAAAGCATCCAAAGATGCCAAGAAAATCAGCAAAAAAAGGAGCAG
TAAAAATGAGGATGCAAGCAATTCACTCATAAGAATCTCTCTTTGA

Translation (271 aa):
MVRLTLDLIARNSNLKPRKEETISQCLKKITHINFSDKNIDAIEDLSLCKNLSVLYLYDNCISQITNLNY
ATNLTHLYLQNNCISCIENLRSLKKLEKLYLGGNYIAVIEGLEGLGELRELHVENQRLPLGEKLLFDPRT
LHSLAKSLCILNISNNNIDDITDLELLENLNQLIAVDNQLLHVKDLEFLLNKLMKLWKIDLNGNPVCLKP
KYRDRLILVSKSLEFLDGKEIKNIERQFLMNWKASKDAKKISKKRSSKNEDASNSLIRISL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH