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Report for CCDS94078.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
94078.1 Public Homo sapiens 7 AVL9 24 110 108 CCDS HistoryNCBI Gene:23080Re-query CCDS DB by CCDS ID:94078.1Re-query CCDS DB by GeneID:23080See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 94078.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000409301.5 ENSP00000387011.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409301.5Link to Ensembl Protein Viewer:ENSP00000387011.1Re-query CCDS DB by Nucleotide ID:ENST00000409301Re-query CCDS DB by Protein ID:ENSP00000387011
Current member NCBI NM_001410870.1 NP_001397799.1 Accepted alive Link to Nucleotide Sequence:NM_001410870.1Link to Protein Sequence:NP_001397799.1Re-query CCDS DB by Nucleotide ID:NM_001410870Re-query CCDS DB by Protein ID:NP_001397799Link to BLAST:NP_001397799.1

Chromosomal Locations for CCDS 94078.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 32495710 32495802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 32543141 32543261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 32544694 32544779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 32548847 32548918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 32551334 32551423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 32552229 32552295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 32553727 32553767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 32554558 32554596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 32558559 32558628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 32558929 32559464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 32570020 32570154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 32573199 32573418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 32575955 32576072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 32580802 32580890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 32583792 32583907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1893 nt):
ATGGAGAAGGCCAGGAGAGGCGGGGATGGCGTCCCCCGGGGGCCCGTACTGCACATCGTGGTGGTCGGAT
TTCACCACAAGAAGGGCTGCCAGGTTGAATTCTCTTACCCGCCCCTGATTCCAGGAGATGGACATGACAG
CCACACTTTACCTGAAGAATGGAAGTATTTGCCCTTCCTTGCCTTACCAGATGGCGCACACAACTACCAG
GAAGATACTGTGTTTTTTCACTTGCCACCCAGAAATGGAAATGGAGCCACAGTATTTGGTATCTCTTGCT
ATCGACAAATTGAAGCCAAGGCACTGAAAGTAAGGCAAGCAGATATCACCAGAGAGACTGTTCAGAAAAG
TGTCTGTGTTCTAAGCAAGCTGCCTCTGTATGGTTTACTTCAAGCAAAACTTCAACTCATTACACATGCA
TATTTTGAAGAGAAGGATTTTTCCCAAATTTCTATTCTAAAGGAGCTTTATGAACATATGAATAGTTCCT
TGGGAGGTGCTTCATTAGAAGGATCCCAAGTATATCTTGGTCTGTCACCTCGAGATCTTGTCCTTCATTT
TCGACACAAGGTCTTAATCCTATTTAAGCTAATTCTTCTTGAAAAAAAGGTTCTTTTTTATATTTCTCCA
GTGAATAAATTGGTGGGTGCACTGATGACTGTGTTATCCCTTTTTCCAGGCATGATTGAACATGGTCTCA
GTGACTGTTCTCAGTATAGACCCCGGAAAAGTATGTCTGAAGATGGTGGGCTTCAGGAAAGTAACCCATG
TGCAGATGATTTTGTTTCTGCATCCACTGCTGATGTTTCACATACCAACTTGGGAACTATCAGGAAAGTC
ATGGCAGGAAACCATGGAGAAGATGCTGCCATGAAGACTGAGGAGCCTTTGTTCCAAGTGGAAGACAGCA
GCAAAGGGCAGGAACCCAATGATACCAATCAATATTTGAAACCTCCATCTCGCCCATCTCCAGATTCTTC
AGAAAGTGACTGGGAAACTTTGGATCCTAGTGTCTTAGAGGACCCCAACTTGAAAGAAAGGGAACAGCTG
GGATCAGACCAGACAAATTTGTTTCCAAAGGACTCTGTCCCCTCAGAGAGTCTTCCAATTACTGTACAAC
CTCAAGCTAATACGGGACAGGTAGTCCTGATACCAGGGCTCATTTCGGGTTTGGAAGAGGATCAGTATGG
CATGCCCCTGGCCATCTTCACAAAGGGATATCTGTGTTTGCCTTACATGGCATTGCAGCAGCATCATCTT
CTCTCCGATGTCACCGTTCGGGGGTTTGTTGCTGGAGCTACTAACATCCTTTTTCGACAACAGAAACACC
TCAGTGATGCCATTGTGGAAGTAGAAGAAGCTCTGATCCAGATCCATGATCCAGAACTCAGGAAGCTGCT
TAACCCAACCACTGCAGACCTAAGGTTCGCAGACTACCTAGTGAGGCACGTGACTGAGAATCGGGATGAC
GTCTTCCTAGATGGCACGGGCTGGGAGGGAGGTGACGAATGGATCCGGGCCCAGTTTGCGGTCTACATTC
ATGCCCTGCTGGCTGCCACACTGCAATTAGACAATGAAAAGATATTATCGGACTATGGGACAACTTTTGT
TACAGCATGGAAGAATACTCACAACTACAGGGTGTGGAACAGCAACAAGCATCCAGCACTTGCAGAAATA
AATCCAAATTCTGTTCAGAATAGTGAACGTGGCAAAAAAATTGGAAACGTCATGGTCACAACTAGCCGGA
ATGTTGTACAAACAGGAAAAGCTGTTGGCCAGTCAGTTGGAGGAGCTTTTTCCAGTGCAAAGACAGCTAT
GTCTTCATGGCTTTCCACTTTCACCACTTCCACCTCCCAAAGTCTCACTGAGCCACCAGATGAGAAGCCT
TGA

Translation (630 aa):
MEKARRGGDGVPRGPVLHIVVVGFHHKKGCQVEFSYPPLIPGDGHDSHTLPEEWKYLPFLALPDGAHNYQ
EDTVFFHLPPRNGNGATVFGISCYRQIEAKALKVRQADITRETVQKSVCVLSKLPLYGLLQAKLQLITHA
YFEEKDFSQISILKELYEHMNSSLGGASLEGSQVYLGLSPRDLVLHFRHKVLILFKLILLEKKVLFYISP
VNKLVGALMTVLSLFPGMIEHGLSDCSQYRPRKSMSEDGGLQESNPCADDFVSASTADVSHTNLGTIRKV
MAGNHGEDAAMKTEEPLFQVEDSSKGQEPNDTNQYLKPPSRPSPDSSESDWETLDPSVLEDPNLKEREQL
GSDQTNLFPKDSVPSESLPITVQPQANTGQVVLIPGLISGLEEDQYGMPLAIFTKGYLCLPYMALQQHHL
LSDVTVRGFVAGATNILFRQQKHLSDAIVEVEEALIQIHDPELRKLLNPTTADLRFADYLVRHVTENRDD
VFLDGTGWEGGDEWIRAQFAVYIHALLAATLQLDNEKILSDYGTTFVTAWKNTHNYRVWNSNKHPALAEI
NPNSVQNSERGKKIGNVMVTTSRNVVQTGKAVGQSVGGAFSSAKTAMSSWLSTFTTSTSQSLTEPPDEKP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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